Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02688 ATGTGGTTTCCTCATTTTGTTCTTCAACACATTACTTTCTTAGTCCTTGCTATTTTTATCACACTTGTTATAGCTCAAAAAGATCATGTAGGTAACATTAATTCTCCTACCCTACCACCCTCAAATGACACAGTCAACATTGGAGCCCAAGATAAATCTTCAGATAAAAATAGTAGACTCAATAATATTTCAATAATCTTGAATGTGGTTCTTCTTGTTGCAATTGTGTTGCTATTGCTGCTTTACTACAACACATCCAGAAAGCTCAATCAAATAGTGAAGAGACAGATTCCTACAGTTACGGAAAAAGAAAATGATATGGAAATCAGTGTTGACAAGAAGATAGAGATAGGAGAGGGGACAATGATGATGGCAGTGGAAGAGAGAAAGGAACTAATATTCTTTAATGATAGGCCTAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGGCATTGGGTCATGGAATATTGGGAAATAGTTATAAGGCTATGCTGAATGATGGACCTACCATTGTTGTAAAGAGGCTTAGGGACTTAAAGCCACTTTCTAAGGAGGAATTTGCCAAGATATTAAATGTGATTGCTGATATGAAGCATCCCAATTTGTTGCCCTTGCTTGCTTACTACCATTCAAGAGATGAGAAGTTGATGCTCTACAGATATGCAGAGAATGGAAATCTTTTCTCCCGACTTCATGATGGTAGAGGTGGAAACCGGGTTCCATTCAGTTGGAACTCAAGATTGTCAGTTGCACGAGGAGTGGCTCGAGCATTGGTGTACTTGCACCTCAACAGCAAGATCCACAACATTGCGCCACATGGCAACTTGCGGTCTTCAAACGTACTGTTCGATGAAAACGATGCAGTTCTTGTTGCTGACTTTGGTCTTGCCTCCTTAATAGCACAGCCAATTGCAGCGCAGCACATGGTTGTTTACAAATCACCCGAATATGGGTATGCAAGAAAGGTGACAATGCAATCCGATGTTTGGAGCTATGGGTCCCTTCTAATAGAGCTTCTAACTGGCAAAGTATCTGTGTACTCAGCTCCATCAGGGACCAATGGCGTGGACTTATGTAGCTGGGTTCACAGAGCTGTCAGAGAAGAATGGACTGCTGAGATATTTGACAAAGAAATTTCTGGCCAAAAGAGAGCTCTTCCTGGGATGCTGAGGTTGTTGCAGATTGCAATGCGTTGCATTGAGAGGTTCCCAGAAAAACGTCCTGAGATGAGAGAGGTGGTCAGAGAAGTGGAGAAAATACAGGCCCCCTTGATCTCTGAAGATGATGATGATGTGTCTGGGGATAGGTCTCTAACTGATGATTCCCTTTCAACCAGTACTTCCATTTCCGTTATTGGAGATGAAAGATAG 1377 0.4161 MWFPHFVLQHITFLVLAIFITLVIAQKDHVGNINSPTLPPSNDTVNIGAQDKSSDKNSRLNNISIILNVVLLVAIVLLLLLYYNTSRKLNQIVKRQIPTVTEKENDMEISVDKKIEIGEGTMMMAVEERKELIFFNDRPKFQMGELLRASAEALGHGILGNSYKAMLNDGPTIVVKRLRDLKPLSKEEFAKILNVIADMKHPNLLPLLAYYHSRDEKLMLYRYAENGNLFSRLHDGRGGNRVPFSWNSRLSVARGVARALVYLHLNSKIHNIAPHGNLRSSNVLFDENDAVLVADFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELLTGKVSVYSAPSGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKRALPGMLRLLQIAMRCIERFPEKRPEMREVVREVEKIQAPLISEDDDDVSGDRSLTDDSLSTSTSISVIGDER 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02688 458 Gene3D Phosphorylase Kinase; domain 1 119 223 - -
Cca08g02688 458 Gene3D Transferase(Phosphotransferase) domain 1 224 439 - -
Cca08g02688 458 PANTHER RECEPTOR-LIKE KINASE 46 451 - -
Cca08g02688 458 SUPERFAMILY Protein kinase-like (PK-like) 152 424 IPR011009 -
Cca08g02688 458 MobiDBLite consensus disorder prediction 440 458 - -
Cca08g02688 458 MobiDBLite consensus disorder prediction 35 56 - -
Cca08g02688 458 ProSiteProfiles Protein kinase domain profile. 148 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02688 458 PANTHER OS05G0588300 PROTEIN 46 451 - -
Cca08g02688 458 SMART serkin_6 148 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02688 458 Pfam Protein tyrosine and serine/threonine kinase 152 418 IPR001245 GO:0004672|GO:0006468
Cca08g02688 458 MobiDBLite consensus disorder prediction 427 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02688 Cca-Chr8 61305420 61308169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02688 113 448 Receptor kinase-like Gene Family AT2G36570 41.011 2.52e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g02688 PK_Tyr_Ser-Thr 4.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02688 - - gmx:100816006 622.854