Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02679 ATGTTTCATATCACATCAGAACCTCATAACAGACCCCCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCACGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAACGAAAATTTTCAAAGACGAAGTTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCTATCAGATTCCCAAAAGGTCACTTCTCCATCATCTAGCTTTCCCACAAATCATAGTGGTGTTCCTTCACTGAGTACAGATTCTGTGAGCCCAACATCCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATATCCACCAAGCAAGTTCTGGGTTGCGCCCATTACATGAGTCACAACATATGGGGAATGGTCCATTTACGGGAAAGATTGATGCTGGTTTGAACAGTTCATATCCTATGCATCCCCTTTCAGGTGATCATGGACAATCAACAATTTCTGGAGTGGATTATATCCCAGTCCCAGTTGCTCACGGGGATAAATTTAGAGGAAATGATACTGCTTATATTGATGGTCATAAAACACATGGTGTGGCACCATGGGACACTGTCTTGGAAAGCACCGCCAAATTTCATAATGATCCTTCTCTTGCATCATTTCCTTCCATCACATCTAGTTCAACAGGAAACGTCCTTGAACAAGACCATACCATTTTTGGTGACCTCATAATGAGCAAAAAAGGTCTCACTGCGGATGCAGAGATCTCTCAGTCTCTCCAAGCAAATTGGCAGATCCCTTTTGAAGACAATTCAGGAGACACGCCAACTTTAACCCAATCATTTGGCCTACAATTTGGATCTGATTATGGCACCGGTTTACTAGGGAACTATACTCGTAATGCAAGTTCTGAAATTGCTCCAGTCCTGTATAATTTTCATGGTGAATCAAAAGAGCAGACTATGCAGCAAAACTATCCAGAAGAGCATGCAGATGAACAATCTCAATATGCAGTAAAATCCAATTCTGCAAATAAAATTCCTGATGAAGAAACCATCAATTATGGCTTAAATGTGAAGTACGCATTATTAGACAGAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGATGGGTTACTAAAGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATACCTCATTGAGTCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAGCCAGAGGTGACAACCTGTAAATGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGATGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCACGTCATAAGGTTGGTCGGGTACCTTTCTATGTAACATGTTCGAATAGGTTAGCTTGCAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCTTTGCTAGAAATGTAGATTTTGCAGATTTTTATAACAGTTCGACTGAAATGTTGCTTCATTTGAGACTGGAGGATTTTCTATCTTTGAAGCCAGTGGACCCTTCAAATCATGCTTTTGAGGGTGACTTGGAGAAAAGAAACGTGATTTTTAAGCTTATATCACTGAGAGAGGAAGAGGAATATTCGATTAAGGAAGAGTCAACTACAGAATTAGATATATCTCAACACAAAGCGAAGGAGCATCTGTTTCTCAGGCAGGTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATATATTAGATGAGGATGGGCAGGGTGTGCTACATTTAGCAGCTGTTCTTGATTATGATTGGGCCATAAATCCAATTATATCAGCTGGAGTTAATATCAACTTCAGAGATGTTAATGGATGGACAGCTCTTCATTGGGCTGCATCCTATGGCAGAGAGCGGACAGTAGCTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCATCAACAGATCCATCTCCAGCATTTCGATCAGGTAGATCTGCTGCAGATCTTGCCTCTAGTAATGGACACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTCATTAACTCACCACCTTGAAACCCTCACAATGGATGATCAAAAGAGCGGTCAACAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTCAGAAAGAACTGCAACACCTGTGATCTATGGTGATATGCCAGATGCCCTCTGCCTGAAGGATTCACTTACTGCCGTGCGCAATGCAACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAATCATTTCAGAGGAAGCAGTTAACTCAGTGTGAAGGTGATGATCAGCTTGGGTTGTCAGATCAACAAGCTCTTTCCCTTCTAGCTTCTAGGGCAGGCAAATCTGGACAAGGAGATGGTTTAGCCAATGCTGCTGCAACACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAAAGAAAAGAATTCTTGATGATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAACAGTATAAAACAATTATCTGGTCCGTGGGAATCCTGGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAGATGCTGTTAATAAAGTCCCCAGTCAACAAAATGATTCTCCGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGGAAACAAAAGGAGGAAATAATCCAAAAGGCCCTATCAAGGGTGAAGTCCATGGCTCAATATCCAGAGGCACGTGCTCAGTACCGGCGTCTGCTAAACGTTGTTGAGGACTTCCGTCAAACCAAGGCATCTGACAAGGGTTTCCTCAATTCTGAAGAGACAGTCGAAAGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3147 0.4147 MFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVLSDSQKVTSPSSSFPTNHSGVPSLSTDSVSPTSSLMSLREDADSEDIHQASSGLRPLHESQHMGNGPFTGKIDAGLNSSYPMHPLSGDHGQSTISGVDYIPVPVAHGDKFRGNDTAYIDGHKTHGVAPWDTVLESTAKFHNDPSLASFPSITSSSTGNVLEQDHTIFGDLIMSKKGLTADAEISQSLQANWQIPFEDNSGDTPTLTQSFGLQFGSDYGTGLLGNYTRNASSEIAPVLYNFHGESKEQTMQQNYPEEHADEQSQYAVKSNSANKIPDEETINYGLNVKYALLDRDESLKKVDSFSRWVTKELGEVADLNMQSSPGISWSTDECQHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESEIEVLIIGSFLKSQPEVTTCKWSCMFGEVEVPDEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADFYNSSTEMLLHLRLEDFLSLKPVDPSNHAFEGDLEKRNVIFKLISLREEEEYSIKEESTTELDISQHKAKEHLFLRQVKEKLYSWLLHKVTESGKGPNILDEDGQGVLHLAAVLDYDWAINPIISAGVNINFRDVNGWTALHWAASYGRERTVAVLVSMGADCGASTDPSPAFRSGRSAADLASSNGHKGISGFLAESSLTHHLETLTMDDQKSGQQEISGMKVVQTVSERTATPVIYGDMPDALCLKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQCEGDDQLGLSDQQALSLLASRAGKSGQGDGLANAAATQIQKKFRGWKKRKEFLMIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPDAVNKVPSQQNDSPKEDDYDYLKEGRKQKEEIIQKALSRVKSMAQYPEARAQYRRLLNVVEDFRQTKASDKGFLNSEETVESVEDLIDIDMLLDDDNFIPIAFD 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02679 1048 SMART CG_1_2 1 96 IPR005559 GO:0003677
Cca08g02679 1048 Pfam Ankyrin repeats (3 copies) 645 725 IPR002110 GO:0005515
Cca08g02679 1048 SMART ANK_2a 735 764 IPR002110 GO:0005515
Cca08g02679 1048 SMART ANK_2a 663 692 IPR002110 GO:0005515
Cca08g02679 1048 SMART ANK_2a 696 725 IPR002110 GO:0005515
Cca08g02679 1048 ProSiteProfiles CG-1 DNA-binding domain profile. 1 101 IPR005559 GO:0003677
Cca08g02679 1048 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1048 - -
Cca08g02679 1048 SMART iq_5 894 916 IPR000048 GO:0005515
Cca08g02679 1048 SMART iq_5 871 893 IPR000048 GO:0005515
Cca08g02679 1048 SUPERFAMILY E set domains 463 548 IPR014756 -
Cca08g02679 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 922 IPR027417 -
Cca08g02679 1048 ProSiteProfiles IQ motif profile. 895 919 IPR000048 GO:0005515
Cca08g02679 1048 Gene3D - 872 919 - -
Cca08g02679 1048 Gene3D - 614 800 IPR036770 -
Cca08g02679 1048 ProSiteProfiles IQ motif profile. 872 901 IPR000048 GO:0005515
Cca08g02679 1048 Pfam IQ calmodulin-binding motif 897 916 IPR000048 GO:0005515
Cca08g02679 1048 Pfam IQ calmodulin-binding motif 874 892 IPR000048 GO:0005515
Cca08g02679 1048 Pfam CG-1 domain 2 94 IPR005559 GO:0003677
Cca08g02679 1048 MobiDBLite consensus disorder prediction 113 148 - -
Cca08g02679 1048 Pfam IPT/TIG domain 463 537 IPR002909 -
Cca08g02679 1048 SUPERFAMILY Ankyrin repeat 651 757 IPR036770 -
Cca08g02679 1048 MobiDBLite consensus disorder prediction 113 158 - -
Cca08g02679 1048 ProSiteProfiles Ankyrin repeat region circular profile. 696 722 - -
Cca08g02679 1048 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1048 - -
Cca08g02679 1048 Gene3D Immunoglobulins 456 551 IPR013783 -
Cca08g02679 1048 ProSiteProfiles Ankyrin repeat profile. 696 728 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02679 Cca-Chr8 61209325 61222521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02679 2 1029 CAMTA Transcription Factor Family AT5G64220 53.810 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca08g02679 Ank_2 1.1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02679 K21596 - gmx:100818124 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01464 09 37947192 37958329 Cca08g02679 08 61209325 61222521 PCT