Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02678 ATGGCTTGTTTCTGTTGCTTCGACTCTAAGGTGGTTGGAGGAAACTCTTCATGTAGCTCTGGCAAGGGTAAGGGCCATCAGTGCTCAGTTAAGTATGGCTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTACCATGTAGCGAAAATTGCCAAGTTTGGCGAGCGGGAATTAGGACTTTTTGCTATATATGATGGACACTTGGGGGACACTGTGCCGGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGGAGGAAGAGGATTTCTGGACTGATACAGCCAGTTCCATCATTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGAGAGGAGGATCAACTGCAGTGACAGCAATTCTTATTAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCTGTTCTGTCAAGAAGAGGGGAAGCCATACAGATGACCATTGATCATGAGCCCAATACTGAAAGGGGCATCATCGAGAACAAAGGCGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGAGACAAAAACCTAAAATCACACCTACGATCTGATCCTGATGTGCAACATGTTGATATTGACTCAGATTCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGGAAACCAAGAGGCAGTTGATATTGCAAGAAGGGTAAAAGATCCACAAAAGGCAGCGAAACAACTAGTTGCTGAGGCATTGAGCAGAGAGAGTAAAGATGATATTTCGTGCATTGTAGTTCGTTTCAAGGGATGA 843 0.4365 MACFCCFDSKVVGGNSSCSSGKGKGHQCSVKYGFSLVKGKANHPMEDYHVAKIAKFGERELGLFAIYDGHLGDTVPAYLQKHLFSNILEEEDFWTDTASSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRRGEAIQMTIDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVQHVDIDSDSELLILASDGLWKVMGNQEAVDIARRVKDPQKAAKQLVAEALSRESKDDISCIVVRFKG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02678 280 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cca08g02678 280 SUPERFAMILY PP2C-like 27 279 IPR036457 -
Cca08g02678 280 SMART PP2C_4 27 276 IPR001932 -
Cca08g02678 280 PANTHER PROTEIN PHOSPHATASE 2C 7 279 IPR015655 GO:0004722|GO:0006470
Cca08g02678 280 SMART PP2C_SIG_2 42 278 IPR001932 -
Cca08g02678 280 CDD PP2Cc 30 278 IPR001932 -
Cca08g02678 280 Gene3D - 15 280 IPR036457 -
Cca08g02678 280 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cca08g02678 280 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 7 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02678 Cca-Chr8 61195433 61201351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02678 1 279 PP2C-type Phosphatase Gene Family AT1G22280 70.383 1.91e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02678 K17506 - gmx:100787659 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01462 09 37929097 37936230 Cca08g02678 08 61195433 61201351 PCT