Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02674 ATGGTGAAGAAGATGGAGGCAGCGTTGAAGTCAGAGTCTCTTGCGTGCATAGATTCCACCACACTCTCACATTCAGAGctcctcgccctctctctctcgtctctcattccctccgcctccgcctccgccctccctcccAAAGTCGACCCCGCCCTCTTCAACGAGAGCGCAGGCTCCCGCCGTCAGACCTACTCGCCGAGCGCCCGCCGCCGCCGCCTCTCGGGGCTCCTGCCGGCGCCCAGCCTCCCTCCCCTCCACCCGGAAAACGCCCAGAACAGGCTGATCATCGAGTACCTGAAAGAGCTGATCCGAGAGGACCCGAAGTTCGAGCAAGTCCAGCTGGCCCCGCCCTCCGGTCCCCCTCCCCGGATCAAGCGGAAGCGAGGGAGAAAGCCCAAACTCAAAGTCCACTTAGATGACTGCTACCGTGGAGGAATCGATCTCTCCCAGTTGGCCCAAGCCCAAGACCCCTTCGCCCAGGAGCTCAAGAGACGCACCGACGGCTTGCGCAACGAAGAGGACCTCTTAGCCTTTCTCCGTGACTTGCCCGGCCAGTGGGGTAGCCGCAGGAAGAAGCGGAGGATCGTCGACGCCGCTGATTTCGGCCACGTCTTGCCCATTCGCTGGAAGCTTCTTCTCGGCTTGAAGAGGAAGGATGGTCGCGCCTGGATCTATTGCCGTAGATACATTAGCCCCGGTGGACAGCATTTTGTGTCCTGCAAAGAGGTGTCTTCCTATTTGCAGTCTCTTTTGGGTCACGGTGATGCACACATGCAGATTACTCGTGGGAGTGAAATTGTAGTGCCAGAACAGAGAGTGCCTGCTCAAAATTCTGCAAGTGTTACCCAGGAGCTTCAAGATCAGATGCAGATCGTTGCTGTTAACTCAGATGTGTCTGGTTTGTCTGCTGCTAATGAGCGAGTGAAGGAGGTTGCCTTGTTGGGGTTTGAAAATCTTGCGGATGTGCAGATTCATGACCTGTTTGAATGTCGCAAGTGCAGCATGAGCTTTGACGAGAAGGATGCGTACTTGAAGCACCTGTTGTCTTTTCACCAGAGGACAACAAGGCGGTACCGGCTCGGTTCGTCTGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGCTACAACGGTCACGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAGGATTCGCCAGGTCAGGCAAATGTCCAGAGGATGGACAAGTCTCCAGTCAGGGAATATGTGCCTTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATACTGTCACGGAACCCCATAGTTCTGCTAAACTGAATAGGATTTCTGCTTCAGATGTTGCTGTTGAGTATTTAGATCAAGACGGAAACTCTGAATCTCCTATCAGTGAACTGCAAATGGAAGATAGCTTGACCGGAAAAAATGTGGCTCGTGATTTGGATGAAAAATTAGAAGAAATTGATGATGATAACCATGTGATTGATGTAAAGATGGTTACTTTTCTAGATAACATGGGTTTGTTATCCGTAAATAAGCAAGATGTTAATGCATTTGAGACTTCTATGGTAAAAGATGATGTGGCATTGACTATTGAGGAACTTGATCAGTCTGAGATTGATTTGGATGGTGCTTCTCAAAACCAGTTACACCCTAAATCTGAACATCACATAGGACAAGAATCTGAAAAGAGTGTATGTACTAATACTAAGAGTCAACTTAAACTTGATGAAGACATTAGTAAGAAGAGTGAGTTGGAATTCAGTTTACTTGGCTTGAAGGATGTACCTGTTACTGTTAGCACTAATGTCCAAGAGATGGTAATGCCAGCTTCTCAAGAAAATGTACCACATTCTAGGGTTTTTAACCCCTCTGTATCCACAGAACAATCTTTGGATTGTTTGCCTGCATTCAGCAGCTCAGATAAGGGAGGAAAACAATTTTGCAGTGTTGCCCATGAACACGATAATGTGAAGGGTTTCCATGAATTGAGGTTTGATGAAATAGATACTGTTGAGTATGATTTTGCAAGGGTGCAAGATTCTCCTCTGCCTGATGTACCAATTGAATTGGCAAATAACACAGTGATGGGAGGGACACATGCATCCTCAGTTCAGCTTGAATCACAAGAAGCTATGCTAAATATTGGTGCCAGAAATCAGCTTACAACTGTGTGCGTATGGTGTGGAATAGAATTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAACTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTGGACTGTGGATCGCCAAACGCCGACTGTCTGTAG 2382 0.4605 MVKKMEAALKSESLACIDSTTLSHSELLALSLSSLIPSASASALPPKVDPALFNESAGSRRQTYSPSARRRRLSGLLPAPSLPPLHPENAQNRLIIEYLKELIREDPKFEQVQLAPPSGPPPRIKRKRGRKPKLKVHLDDCYRGGIDLSQLAQAQDPFAQELKRRTDGLRNEEDLLAFLRDLPGQWGSRRKKRRIVDAADFGHVLPIRWKLLLGLKRKDGRAWIYCRRYISPGGQHFVSCKEVSSYLQSLLGHGDAHMQITRGSEIVVPEQRVPAQNSASVTQELQDQMQIVAVNSDVSGLSAANERVKEVALLGFENLADVQIHDLFECRKCSMSFDEKDAYLKHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDSPGQANVQRMDKSPVREYVPLRISKMDALIEIAQNSIMEDTVTEPHSSAKLNRISASDVAVEYLDQDGNSESPISELQMEDSLTGKNVARDLDEKLEEIDDDNHVIDVKMVTFLDNMGLLSVNKQDVNAFETSMVKDDVALTIEELDQSEIDLDGASQNQLHPKSEHHIGQESEKSVCTNTKSQLKLDEDISKKSELEFSLLGLKDVPVTVSTNVQEMVMPASQENVPHSRVFNPSVSTEQSLDCLPAFSSSDKGGKQFCSVAHEHDNVKGFHELRFDEIDTVEYDFARVQDSPLPDVPIELANNTVMGGTHASSVQLESQEAMLNIGARNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPTCKAKISGQVNVLDCGSPNADCL 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02674 793 MobiDBLite consensus disorder prediction 111 130 - -
Cca08g02674 793 ProSitePatterns Zinc finger C2H2 type domain signature. 377 397 IPR013087 -
Cca08g02674 793 ProSitePatterns Zinc finger C2H2 type domain signature. 330 351 IPR013087 -
Cca08g02674 793 SMART c2h2final6 375 397 IPR013087 -
Cca08g02674 793 SMART c2h2final6 328 351 IPR013087 -
Cca08g02674 793 Gene3D Classic Zinc Finger 316 403 - -
Cca08g02674 793 ProSiteProfiles Zinc finger C2H2 type domain profile. 375 402 IPR013087 -
Cca08g02674 793 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 7 782 - -
Cca08g02674 793 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 7 782 IPR037472 -
Cca08g02674 793 MobiDBLite consensus disorder prediction 565 584 - -
Cca08g02674 793 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 356 IPR013087 -
Cca08g02674 793 MobiDBLite consensus disorder prediction 50 85 - -
Cca08g02674 793 SUPERFAMILY DNA-binding domain 200 250 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02674 Cca-Chr8 61159984 61164593 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca08g02674 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02674 - - gmx:100526917 1107.05