Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02668 ATGGAAAACGACGACGTCGACATGCAAGCAGCCGATACCAATGAAGCAGATTTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTCTGCGAGAgatgcaggctaaggtcgagaaggagatgggatccgtgcaagATCCTGCAAATGCTTCTGCGAGTCAGGCCAATAGAGAGGAGATAGATGCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCAGAAGAAGTGCAACAGCATTTTCAGTCTTGCGGAACCGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAGCCCAAGGGTTATGCTTATGTAGAGTTTGTTGAGGTTGAGGCTGTTCAGGAGGCCCTCTCGCTGAATGAATCTGAACTTCATGGGCGCCAACTAAAGGTAACCGCTAAAAGGACCAACATACCAGGGATGAAACAGCATCGTCCCCGCCGGGCCAATCCTTACATGGGGGGCTTTCGAGGCAGAACCCCATATGCCCCTCCTTTTATGTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGCTACAGCCCCTACTATTGA 594 0.4529 MENDDVDMQAADTNEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANASASQANREEIDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQHRPRRANPYMGGFRGRTPYAPPFMYSPYGYGKVPRFRMPMRYSPYY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02668 197 CDD RRM_II_PABPs 69 140 - -
Cca08g02668 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Cca08g02668 197 Coils Coil 11 45 - -
Cca08g02668 197 MobiDBLite consensus disorder prediction 43 62 - -
Cca08g02668 197 PANTHER - 4 194 - -
Cca08g02668 197 Gene3D - 3 141 IPR012677 -
Cca08g02668 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 194 - -
Cca08g02668 197 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Cca08g02668 197 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g02668 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Cca08g02668 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02668 Cca-Chr8 61096829 61101304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02668 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 2.96e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02668 K14396 - gmx:100791351 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01457 09 37855697 37861234 Cca08g02668 08 61096829 61101304 PCT