LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g02666	ATggagaaggagaaggagaaggagaaggagaaTCCACTTTACTGGAAGCAGCTAATGGTCAACTTTCTCGTACGCAACCACTCCGACGAGCTTCGTTCTATCGTTTCTTCTCCCGATCTCAACCTTCACTTCCCTCTCTTCGTCGATTTGGCAGAGTTAATGGACCACCATCCTCTCACTTTCCAGCTCCTCTTTTACAAACCCAAAACCTACTTGCCACTATTCGATGAAGCTTCCCTTTGGGCTCACAGAGTCTTATTGAATGATATGGCGGATGACAAGAAAGGGGGTGAGAAAAAATTCATTCATGTTCGTATTAACATCGGCGGCTCACCCCTTGAATGCCCATGCCCTGTAAATTTTCCAAGCATAGGACGTGTTCGCGTGCAGCACCATGGAATTCTTCTCACTCTCAAGGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGGGAGAGGATGTACATGTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGGGGTTCAAGCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATACCTCGTTCAATTCTTGTCATATTAAAGGATGACCTTGTAGATGTTGTTAAAGCTGGAGACGATGTGATTGTCACTGGTGTCTTAACAGCAAAGTGGTCTCCAGAGTTGAAGGATGTGCGCTGCGACCTTGATCCTGTATTCATTGCCAACACTATAAGGAGAATCAATGAACTGAAGTCAGAAATTAATACTTTGCATGACACTGTTATCAAATTCAAGCAGTTTTGGGCGCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTTGATGCTACTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGGGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACGATACACGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCTCTAGAACAACTGTATTTGGCGCCACAAATCCCAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACAACGCTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCTGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGTACCACCAATGATGAAGATCTGGTAAATAGCTGGCCACTTCCTACACTGAAGAGGTACATACAGTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAGCTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTCTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATAGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAAGCAAGAAAGATTGATCCTAGAAAAATTGGAATCAATAGATGACTTTCCTGATATGAATGAATAG	2004	0.4276	MEKEKEKEKENPLYWKQLMVNFLVRNHSDELRSIVSSPDLNLHFPLFVDLAELMDHHPLTFQLLFYKPKTYLPLFDEASLWAHRVLLNDMADDKKGGEKKFIHVRINIGGSPLECPCPVNFPSIGRVRVQHHGILLTLKGIVIRSGAIKMHEGERMYMCQKCKNSFPVYPEVEARNSISLPSICPIQGFKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGVLTAKWSPELKDVRCDLDPVFIANTIRRINELKSEINTLHDTVIKFKQFWAHFKDSPLKGRNAILRAICPQVFGLFTVKLAVALTLIGGVQHVDATGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSSRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDSTTNDEDLVNSWPLPTLKRYIQYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLESIDDFPDMNE	667

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g02666	667	Coils	Coil	274	294	-	-
	Cca08g02666	667	Gene3D	-	298	625	IPR027417	-
	Cca08g02666	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	353	368	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca08g02666	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	411	425	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca08g02666	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	439	452	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca08g02666	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	489	497	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca08g02666	667	Pfam	MCM P-loop domain	314	517	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca08g02666	667	SMART	AAA_5	354	503	IPR003593	-
	Cca08g02666	667	CDD	MCM9	315	619	-	-
	Cca08g02666	667	Pfam	MCM AAA-lid domain	538	619	IPR041562	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g02666	Cca-Chr8	61075000	61087718	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g02666	19	644	Core DNA Replication Machinery Family	AT2G14050	74.204	0.0	971

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g02666	K10738		-	gmx:100776255	1148.65

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