Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02666 ATggagaaggagaaggagaaggagaaggagaaTCCACTTTACTGGAAGCAGCTAATGGTCAACTTTCTCGTACGCAACCACTCCGACGAGCTTCGTTCTATCGTTTCTTCTCCCGATCTCAACCTTCACTTCCCTCTCTTCGTCGATTTGGCAGAGTTAATGGACCACCATCCTCTCACTTTCCAGCTCCTCTTTTACAAACCCAAAACCTACTTGCCACTATTCGATGAAGCTTCCCTTTGGGCTCACAGAGTCTTATTGAATGATATGGCGGATGACAAGAAAGGGGGTGAGAAAAAATTCATTCATGTTCGTATTAACATCGGCGGCTCACCCCTTGAATGCCCATGCCCTGTAAATTTTCCAAGCATAGGACGTGTTCGCGTGCAGCACCATGGAATTCTTCTCACTCTCAAGGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGGGAGAGGATGTACATGTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGGGGTTCAAGCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATACCTCGTTCAATTCTTGTCATATTAAAGGATGACCTTGTAGATGTTGTTAAAGCTGGAGACGATGTGATTGTCACTGGTGTCTTAACAGCAAAGTGGTCTCCAGAGTTGAAGGATGTGCGCTGCGACCTTGATCCTGTATTCATTGCCAACACTATAAGGAGAATCAATGAACTGAAGTCAGAAATTAATACTTTGCATGACACTGTTATCAAATTCAAGCAGTTTTGGGCGCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTTGATGCTACTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGGGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACGATACACGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCTCTAGAACAACTGTATTTGGCGCCACAAATCCCAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACAACGCTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCTGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGTACCACCAATGATGAAGATCTGGTAAATAGCTGGCCACTTCCTACACTGAAGAGGTACATACAGTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAGCTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTCTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATAGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAAGCAAGAAAGATTGATCCTAGAAAAATTGGAATCAATAGATGACTTTCCTGATATGAATGAATAG 2004 0.4276 MEKEKEKEKENPLYWKQLMVNFLVRNHSDELRSIVSSPDLNLHFPLFVDLAELMDHHPLTFQLLFYKPKTYLPLFDEASLWAHRVLLNDMADDKKGGEKKFIHVRINIGGSPLECPCPVNFPSIGRVRVQHHGILLTLKGIVIRSGAIKMHEGERMYMCQKCKNSFPVYPEVEARNSISLPSICPIQGFKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGVLTAKWSPELKDVRCDLDPVFIANTIRRINELKSEINTLHDTVIKFKQFWAHFKDSPLKGRNAILRAICPQVFGLFTVKLAVALTLIGGVQHVDATGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSSRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDSTTNDEDLVNSWPLPTLKRYIQYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLESIDDFPDMNE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02666 667 Coils Coil 274 294 - -
Cca08g02666 667 Gene3D - 298 625 IPR027417 -
Cca08g02666 667 PRINTS Mini-chromosome maintenance (MCM) protein family signature 353 368 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 PRINTS Mini-chromosome maintenance (MCM) protein family signature 411 425 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 PRINTS Mini-chromosome maintenance (MCM) protein family signature 489 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 Pfam MCM P-loop domain 314 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 SMART AAA_5 354 503 IPR003593 -
Cca08g02666 667 CDD MCM9 315 619 - -
Cca08g02666 667 Pfam MCM AAA-lid domain 538 619 IPR041562 -
Cca08g02666 667 Gene3D - 127 256 IPR012340 -
Cca08g02666 667 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 37 658 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 629 IPR027417 -
Cca08g02666 667 SMART mcm 120 621 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 Gene3D - 151 207 - -
Cca08g02666 667 PANTHER DNA HELICASE MCM9 37 658 - -
Cca08g02666 667 Pfam MCM OB domain 126 255 IPR033762 -
Cca08g02666 667 ProSiteProfiles MCM family domain profile. 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g02666 667 SUPERFAMILY Nucleic acid-binding proteins 43 262 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02666 Cca-Chr8 61075000 61087718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02666 19 644 Core DNA Replication Machinery Family AT2G14050 74.204 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02666 K10738 - gmx:100776255 1148.65