Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02665 ATGGCGAAGAGAAGGAGAAAGAGAAAGAGGAAGCAAGAGTTGTTACCGTACGACGTGGTAATGAACATTCTGATAAGAGTCCCCGTGAAATCCCTCCTCCGATTCCAATGCGTCTCCAAGCAATGGCTTAACATGATCAAAGCCAACCCTTTCTTCATCCAACACCACCTTCTTCACTCTTCCCAAAACCCCTtcctcctcctccaacgaatctctcgccagcctcgccctctccccttctcctcctgcctcatcGGAGTCGGACCCCACATCACCGACTTCCCCATCGCATCTCCCACCGCCAAAATCCTCGCTTCCTGCAACGGCCTCTTGTGCCTCCGTGAAAAAACCAAGCTTTCCCTCCTCAACCCCGCCACTAACCAAATCAAACACCTCCCCGGAAAAACCCTATTCGGTTTTCACTACATCGGATTCGGCTTCACCCCTCAATCCAACGACTACAAGATAGTCACAATCTCCATGCACGTCATCCACCAGGACCATGTCCTTCTCGATCTCGACCACGTTAGGGTTGACCGCGCCCAACTTTATTCCTTAAACTCTGCCTCCTGGAAGGAGATTGACGCCGTAAAGTTGCAACCTTTGTGCCTTGTCTCTAGCTCCGTCGCTATCACTGGAAACGTCTTCTGGCTTGCCACCATGGCTTCTGACTCTGCCACTGATTCTGAGTTTGTCGTTTCCTTTGACATCGCTAGGGAGTTTTTCACGCTGTTGGACGGTCCTCCGGTTCCTTCTTCACCCACTCGTTCCTATAGCAACGTGCTTGCGGTTCGTAACGATAAGCTCGCCATGTTTCGGCACTACATTGTTGGGAACTTTGAGTCTTGTTCCTTTGATTTGTGGGTGTTGGAGGATTTTGGTAATGATGATGCTTGTGGGGTTGGGGAGAGATGGGTTAAGATGTATAGTGTGGGCCCCTTTTCAAGGGTTTTGTATCCGTTGAGTATATGGAGAGATGAAGTTGTGTGTAGGGAAGAGGTTTCTGGACATGGGAACGAGTACAGAGGAGTGGAAACGGTTCTGTCGCTGTTCAATCCTTTGAGTAATGAACTGAAGAATCTGCCAGCGCATAGAGATGAGTATTGCTATGTGCCCTTTACTTATGCTGAGAGTCTTGTTCCACTTTGA 1149 0.463 MAKRRRKRKRKQELLPYDVVMNILIRVPVKSLLRFQCVSKQWLNMIKANPFFIQHHLLHSSQNPFLLLQRISRQPRPLPFSSCLIGVGPHITDFPIASPTAKILASCNGLLCLREKTKLSLLNPATNQIKHLPGKTLFGFHYIGFGFTPQSNDYKIVTISMHVIHQDHVLLDLDHVRVDRAQLYSLNSASWKEIDAVKLQPLCLVSSSVAITGNVFWLATMASDSATDSEFVVSFDIAREFFTLLDGPPVPSSPTRSYSNVLAVRNDKLAMFRHYIVGNFESCSFDLWVLEDFGNDDACGVGERWVKMYSVGPFSRVLYPLSIWRDEVVCREEVSGHGNEYRGVETVLSLFNPLSNELKNLPAHRDEYCYVPFTYAESLVPL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02665 382 ProSiteProfiles F-box domain profile. 9 55 IPR001810 GO:0005515
Cca08g02665 382 TIGRFAM F_box_assoc_1: F-box protein interaction domain 105 319 IPR017451 -
Cca08g02665 382 SMART fbox_2 15 55 IPR001810 GO:0005515
Cca08g02665 382 PANTHER BNAA05G37150D PROTEIN-RELATED 14 309 - -
Cca08g02665 382 Pfam F-box associated 209 311 IPR006527 -
Cca08g02665 382 SUPERFAMILY F-box domain 14 71 IPR036047 GO:0005515
Cca08g02665 382 Pfam F-box domain 15 50 IPR001810 GO:0005515
Cca08g02665 382 Gene3D - 3 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02665 Cca-Chr8 61067277 61068425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02665 150 294 Carbohydrate Esterase AT1G25141 27.397 2.97e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02665 - - gmx:102669119 532.717