Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02657 ATGGGGCTGCATCACAGAAGGTTGATTCCCGAAATCTGTGCGTCAATTTGCCATGTGAAGGCTTCTGAGCCTTGTTCACCAGATTGCACACTTTGCCTCAAGATCTGCCTAACCAAACCGCCCCAATACCCTTTTAATTATTTCCCTCCGCTGCAACCACCACCACTTCCTTCTTTCAACTCAGATGTTGATGTCTCAGATCAAGGAACCTACCACAGAGTCTCCACCTATTTGTTCCTCGCCCTCGCTCTTCTGACTGCTGCTTTCTTTGTTGTTTGTTGCCGTGCCATCTATACCAGGTTTACCTCAAGGAGGAGGATATCATTAAGGCACCAAAATCAGGACACCCCTGATGATGATTTTGTTGATCAAGAGCATGGTGGTCCTATGGTGGACCACCCCATCTGGTATATTCGCACCCTTGGCCTTCAGCAATCAATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGCGAGGGCTTGATTGAGGGAACGGAGTGTGTTGTTTGCTTGAGTGAGTTTCAAGAGGATGAAAACCTCAGACTTTTGCCAAAATGTCATCATGCTTTTCATTTGCCTTGTATTGATACCTGGCTTAGGTCTCATACCAATTGTCCCATGTGCCGGGCTCCCATTGTTAATGACCTTGCAGCTGCTAGGATGGAGTCTAGTTTTGTTGAGTCAAGTTCCTTGGGAAATTCCCATGCCCAAGTTTTGGAAAATAGTGCTCCGGATTCTGATTTATTGAATAATAGGGCAGAGGAAGAAGGCCAATTAGGAGATGAAGATGAAGATGGAGTGAGGGTGTGTGAAACTGAGAGCCAAGTTGAAGGGGTGGCAAGCATTCGTCCTAGAAGATCTGTTTCTCTGGATTCTTATTCTGTTGCAAATATCAATTTTGCTCTTGCAAAGGTTCTATCAGAAGAATCTAATGGCAACTCAAATAGAGTGCCGAGGGCCATGGATGATCCCAGTGCTTCAAAGGGGGTTACTGGAAATGATTTGGCGACTACTTCCAAAGGTAACGCTTCTTTTAGGTTAACAAGATATCTGCAGGGTGTTCCTAGTTCAATGAAAAGGTCACAGTCCTACAACGGGAAAAACCTTTTGTCCTGGTACGGCCGCAGTCAGAAGAAGCCAAACGCTTCTCTGTCAAGCTTTTAG 1167 0.4516 MGLHHRRLIPEICASICHVKASEPCSPDCTLCLKICLTKPPQYPFNYFPPLQPPPLPSFNSDVDVSDQGTYHRVSTYLFLALALLTAAFFVVCCRAIYTRFTSRRRISLRHQNQDTPDDDFVDQEHGGPMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTECVVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVNDLAAARMESSFVESSSLGNSHAQVLENSAPDSDLLNNRAEEEGQLGDEDEDGVRVCETESQVEGVASIRPRRSVSLDSYSVANINFALAKVLSEESNGNSNRVPRAMDDPSASKGVTGNDLATTSKGNASFRLTRYLQGVPSSMKRSQSYNGKNLLSWYGRSQKKPNASLSSF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02657 388 MobiDBLite consensus disorder prediction 310 340 - -
Cca08g02657 388 CDD RING-H2_EL5_like 167 210 - -
Cca08g02657 388 Pfam Ring finger domain 167 210 IPR001841 -
Cca08g02657 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 218 IPR013083 -
Cca08g02657 388 SUPERFAMILY RING/U-box 161 216 - -
Cca08g02657 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 379 - -
Cca08g02657 388 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Cca08g02657 388 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 379 IPR044675 -
Cca08g02657 388 SMART ring_2 168 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02657 Cca-Chr8 61010305 61012463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02657 74 345 C3H Transcription Factor Family AT1G72220 37.342 2.95e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02657 - - gmx:100804758 536.184