Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02652 ATGTGGTTGGGTCTTTTGGTTGACGTGTGCCGCCAAGTTATAGGAAGTGAAGATAGAGCCTGCTTGGTGCCTTTATTATCACGTTCTATTGGGGCATTTTCTTTGGAGTGTGCATTACATTCTCTTGTGCATGCTTTCAACCTTTGCACGATTGTCAGGCTGAGTACTTCCGTCATTTGCTTAAGCCTGTCACAGAAGCAGCAAGTCATTGAAGATCTATCAAGGCACCATAACATCTGCTGGTCATTTCTTTTGTTGAATGAGCCCAGTTCACAGGTTCATTCAGCATATATGAACCCTAGCACATGCATCTTTCCTGCTGTCAGCATATTTCCAAGGTTCACGTCCCCTGCTATCCCAAACTTGAAGACTGAGCAGACCAATGAAGTGCAAAGATTCCTTCAGTATCCCAATTCAGAACCATGTTTGAAAGAAATACATACTGGGGGGGCTATTCAAAATGCAAATCATGCATCTTTGCAGAAGAAGTTACTTATTTTCGACCATTCTTGTGGTAAGACAAGGTTGCTTTATAGTCCTGTCTACCCTCTTGTCCAGAGTCCAATTGTTACTGCTACACATTTTGCTCAAGTTTATGATGTTAAAGAGGAAGCACAGGCAATTAATATGGGCCAAATGCATTTTCCCGTATACAATTCACCAGAAGAGACTGGTAAGGATCATATAGACAATGAAGAAAGTGAAATGCATGAAGACACAGAAGAAATCAATGCATTGCTTTACTCtgatgattctgatgatgatgatgaGGTAACAAGTACAGGCCATTCTCCATTGGTTAGTAAAAGAACTTATGATATGCGAGAACAGTTTGAAGATATGAAGGAGGAGGTTGCTAGCTCTGATTGGCCAAACAAAAGGCAGAAGTTAATTGGTGGTGGATACAATAAATTACCACCACTTGTGGACAGTGCTAGTTCTGAATGGCTAAATGAAACATGTGAGTATGTCAGCGATGCTGAATCGAAGTATTCTAGTAGTGGGGTGTATTCTTCAAGGCATATTAAAGAAGATAATTCAACAGTTGCTGATATTCAATTGAAAAAGGAGAAAATCCGTGAATTTTTTAGAGTTCTTGAGAACTTCATTCCTGGAGCAAAAGGAAAGCATCCCCTGCTAGTCATCGATGGTACTATTGAGTACTTGAAATCTTTGATGTACCAAACTGGTACACTGTGA 1200 0.3958 MWLGLLVDVCRQVIGSEDRACLVPLLSRSIGAFSLECALHSLVHAFNLCTIVRLSTSVICLSLSQKQQVIEDLSRHHNICWSFLLLNEPSSQVHSAYMNPSTCIFPAVSIFPRFTSPAIPNLKTEQTNEVQRFLQYPNSEPCLKEIHTGGAIQNANHASLQKKLLIFDHSCGKTRLLYSPVYPLVQSPIVTATHFAQVYDVKEEAQAINMGQMHFPVYNSPEETGKDHIDNEESEMHEDTEEINALLYSDDSDDDDEVTSTGHSPLVSKRTYDMREQFEDMKEEVASSDWPNKRQKLIGGGYNKLPPLVDSASSEWLNETCEYVSDAESKYSSSGVYSSRHIKEDNSTVADIQLKKEKIREFFRVLENFIPGAKGKHPLLVIDGTIEYLKSLMYQTGTL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02652 399 PANTHER TRANSCRIPTION FACTOR BHLH145 83 399 IPR037546 -
Cca08g02652 399 PANTHER TRANSCRIPTION FACTOR SAC51 83 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02652 Cca-Chr8 60981578 60983585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02652 159 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G64340 39.754 1.99e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02652 - - gmx:100778385 489.574