Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02645 ATGGAGGGTCACGGAGGAGGAGGGAACAGGGCCGAAGCGGAGCGCTGGCTCTACACGGCCAACAAGGTCTTGAGCGCACGTGACCTGCACGGGGCCCGTTCCTTCGCGATCCGGGCCCGAGAGTCCGACCCGAGATACGAGCCCACGGAGCTGCTTCTAACGGTCATCGATACCCTCATGGCGGGCGAGGCCCGGATCAGCGACCACCTCGATTGGTACGCCATACTTCAAGTCCTCCGCTACACTCAGAACATCGACTACATCGCCGCCCAGTACCGCCGCCTCGCCACCCAACTCGACCCTCACCACAACCCCTTCGCCTTCGCCGCGCATGCTTTCACTCTCGTCCACGACGCTTGGTCCGTACTCTCTAACCCTAACAAGAAAGCCTTTTACGACAATCAGCTCAGAAtcctcactcaacctgctcctgctcctcctcctgctcctcctcctccaccgccgcctcctcctcctcccgctccCGTGACCTTCTTCCCGATTCAGCCCTCGCATCCGAACCTAAATCAAAACCTTAACTCGAACCTAATTTCGAGCCCGACGCCCCGAAGGGAAAGCCCGGGGAGGCCTAGGGTTGAGGCGCCGAGTCAAGAGGAGAATCTCGAAAGGGAAAGGCCTAGGGGTGAGGTGCCGAGTCAGGAGGACAATGCCAGCGAGTTGACTCGGGCGAGTGAGAGTGTAACGGAGGGGGCGAGTTTCTGGACAGCGTGTCCTTACTGTTACGTCATGTACGAGTATCCCAAGAAGTACGAGGACTGTACGCTGCGGTGCCAGAGTTGTCGGAGGGGGTTTCATGCGGTGGTTGTACGGTCGCCGCCGGTTATGTCTGATGGTAATGGTAAAGATGGTTACTTTTGCAGTTGGGGTTTTTTCCCTGTTGGGTTTTCCGGCGATTTCAAGGATGTGAGTGGGTCTTCTTCCAAGTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTACGAAGGGGGATTCGGGAAACAGGAACAAGAAGGGGCCTTGGGTTTTTTATGATGATGACGCCTCTGCGGAGTTCGTGGAGCATTCCATCACCACGGAGGATGATTCCGATGACGGCGACTGGCGAGGCGGGCCTCTGAAGGGGACCAAGAGGAGGAAAAAGAAAAGGAGAGGCAGTGGTGATGTTAGAAGGGTGCCACTGGTTGAGAGGCCTAGGAGGGGGGCTCGTAGTGGTGATGGTAATGGTAATGATGGCAATGTGGGGAATGGTGAGGCTGTGGATGGAGCTGCCACCGTGGCGGCAGTGTCGGTGGTGCCCGAGCCTAGCAAGAAGGCGGCGTTCGGTGGTTCAAGGAGGAGGAGTGAGAGGAACGTGGGGAAGTTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAGGAGCCTGTGCATGGAGGGGGTgaagggaacggggatgggaatgggactgggaatgCTGAGGATAATATTGAAGGGATTGGATTTTTTGAGGGGCTGGATGAGTTCCTCAGTAGCTTGCCAATTCTCAATGTTGTTGCAGATGATAAGGTTAAGGGTCATTAG 1557 0.5228 MEGHGGGGNRAEAERWLYTANKVLSARDLHGARSFAIRARESDPRYEPTELLLTVIDTLMAGEARISDHLDWYAILQVLRYTQNIDYIAAQYRRLATQLDPHHNPFAFAAHAFTLVHDAWSVLSNPNKKAFYDNQLRILTQPAPAPPPAPPPPPPPPPPPAPVTFFPIQPSHPNLNQNLNSNLISSPTPRRESPGRPRVEAPSQEENLERERPRGEVPSQEDNASELTRASESVTEGASFWTACPYCYVMYEYPKKYEDCTLRCQSCRRGFHAVVVRSPPVMSDGNGKDGYFCSWGFFPVGFSGDFKDVSGSSSKWNPFSPLFPCPTKGDSGNRNKKGPWVFYDDDASAEFVEHSITTEDDSDDGDWRGGPLKGTKRRKKKRRGSGDVRRVPLVERPRRGARSGDGNGNDGNVGNGEAVDGAATVAAVSVVPEPSKKAAFGGSRRRSERNVGKLDLNVEFSNEVEEPVHGGGEGNGDGNGTGNAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02645 518 MobiDBLite consensus disorder prediction 355 372 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 193 219 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 140 232 - -
Cca08g02645 518 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Cca08g02645 518 Pfam DnaJ domain 71 133 IPR001623 -
Cca08g02645 518 Gene3D DnaJ domain 65 142 IPR036869 -
Cca08g02645 518 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 6 518 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 169 189 - -
Cca08g02645 518 SUPERFAMILY Chaperone J-domain 65 137 IPR036869 -
Cca08g02645 518 CDD DnaJ 71 125 IPR001623 -
Cca08g02645 518 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 518 - -
Cca08g02645 518 CDD PHD_SF 244 295 - -
Cca08g02645 518 SMART dnaj_3 70 128 IPR001623 -
Cca08g02645 518 MobiDBLite consensus disorder prediction 462 487 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 355 417 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 387 403 - -
Cca08g02645 518 MobiDBLite consensus disorder prediction 141 167 - -
Cca08g02645 518 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02645 Cca-Chr8 60917059 60919282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02645 12 517 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 38.623 6.30e-101 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02645 - - ccaj:109804406 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01435 09 37620063 37621460 Cca08g02645 08 60917059 60919282 PCT