Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02644 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAGGTGACATTCTCAAAGAGAAGGAAAGGTCTTTTCAAGAAGGCTCAGGAGCTGTCAACTCTTTGTGATGCTGAAATTGCTCTAATAGTCTTTTCTGCAACCAGCAAGCTCTTCGAGTACGCAAGTTCAAGCATGCAACATATAATTGAAAGGCGTAATCGGCATTCAGCGATTCAAGGATTAGACAATCCATCTATTGAGCAACAGCTTGGAAGCGTCTCCTATGACATGCTGCGCAAGGAAGTGGAAGATAAGACTCATGAACTGAGTAGGTTGAATGGAAAAGAGTTGCAAGGATTGACAATACAAGAATTGCAGAAGCTGGAGGAACTTCTTCTCAGACGTTGGGCCACTATTTCAAAAATTAAGGATGAAAAAATTATGCAAGAGATAAACAGCCTTAAAACAAAGGAAGCCGAACTTATGAAAGAGAACCAGCTGAAATCGAAACAGAGCTTCGTACTAGAACAAAGGCAATCACATGAGCCATATACCTGCAGTTCATCTGATTTTCCTCCAGATCATGGTAGTTCTGCTGACACATCTCTCAAGTTGGGGTTGGCTTTATTTGAATGA 627 0.4163 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYASSSMQHIIERRNRHSAIQGLDNPSIEQQLGSVSYDMLRKEVEDKTHELSRLNGKELQGLTIQELQKLEELLLRRWATISKIKDEKIMQEINSLKTKEAELMKENQLKSKQSFVLEQRQSHEPYTCSSSDFPPDHGSSADTSLKLGLALFE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02644 208 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Cca08g02644 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 Coils Coil 92 112 - -
Cca08g02644 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Cca08g02644 208 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cca08g02644 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Cca08g02644 208 PANTHER - 1 187 - -
Cca08g02644 208 Pfam K-box region 91 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g02644 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca08g02644 208 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02644 Cca-Chr8 60867311 60906911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02644 1 204 MADS-box Gene Family AT2G22540 45.339 2.36e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca08g02644 K-box 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02644 - - gmx:100810422 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01434 09 37575937 37591401 Cca08g02644 08 60867311 60906911 PCT