Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02643 ATGGTTCGAAAGAAGATACCGATGAAGAGGATCGAGGACGTAACAGCGAGGCAGGTGTGTTTCTCGAAGAGGAAGAGTGGTCTTTTGAAGAAGGCACGTGAGCTCTCCATTCTTTGTGATGCTGAGATTGCTCTCATCGTCTTTTCACCTGCTTCCAAACTCTTCCAATATGCTACTTCAAGTATGGAGAAGGTAATTGAAAGGTATATTTCACGGTCAGAGCTGAACCTTGACAAATCAGGCCAGTCATGTGCTGAGGAGCAGATTAGATATAATTACGCTGATTTGAACAAGAAATTAGGAGAGAAGACTTGTGAAATGAGCCAACTGAATGGAGAAGAACTGCAAGGATTGAGCCTAAAGGAACTACAGAAACTAGAAGATCGACTTGACTCATCCTTGAACCGTGTTTATAAAGTCAAGGTTGAAAATTTTATGACAGAGATCGATATTCTTAAGCAAAAGGGACATAAACTCAGGGCAGAAAATCGGCTGGCAAAACAGAAAAAAGCTAGTAATAAATTATGTTTGGTCCAGAGACACGAGCATGAACAAGGCCAGTCCTCGGACACCTCCCTTACATTGGGGCTCAAAATAACTTCTGGTCAATGA 612 0.4199 MVRKKIPMKRIEDVTARQVCFSKRKSGLLKKARELSILCDAEIALIVFSPASKLFQYATSSMEKVIERYISRSELNLDKSGQSCAEEQIRYNYADLNKKLGEKTCEMSQLNGEELQGLSLKELQKLEDRLDSSLNRVYKVKVENFMTEIDILKQKGHKLRAENRLAKQKKASNKLCLVQRHEHEQGQSSDTSLTLGLKITSGQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02643 203 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 189 - -
Cca08g02643 203 Coils Coil 93 113 - -
Cca08g02643 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca08g02643 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca08g02643 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca08g02643 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca08g02643 203 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g02643 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 - -
Cca08g02643 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca08g02643 203 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cca08g02643 203 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g02643 203 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Cca08g02643 203 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Cca08g02643 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02643 Cca-Chr8 60857121 60863314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02643 1 169 MADS-box Gene Family AT2G22540 46.199 2.89e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca08g02643 K-box 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02643 - - gmx:100779995 284.648