Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02630 ATGGCAACTTCTCATTTAACAAGCCAACATAGACCCTCAAGGATTCCAAATCTTATTGGGGGCAGTTTTGTGGACTCAAAATCTTTGACTTTCATTGATGTTATCAACCCTGCAACACAAGAAGTAGTTTCACAAGTTCCTTGCACTACAGATGAAGAGTTTAAAGCTGCAGTATCTTCAGCAAAGAAGGCATTTACATCATGGAGAAACACTCCAATCACGAAACGCCAGCGTGTTATGTTGAAGTTCCAAGAGCTTATACGCAGAGATATGGATAAACTTGCATTGAATGTGACTACTGAACAAGGAAAGACGTTAAGGGATGCACAAGGAGATGTGTTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTTCAAATGGGGGAATATGTTTCCAATGTATCAGTTGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCCTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAATTACCTGCGGAAATACCTTTATTCTAAAACCGTCAGAAAAAGTTCCAGGTGCTTCTGTAATGCTAGCAGAATTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATGTAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGATGATGACGACATCAAAGCCATATCTTTCGTTGGTTCAAATGTTGCTGGAATGCACATATATGCGAGAGCAGCAGCTAAAGGGAAACGTGTTCAGGCTAATATGGGGGCAAAAAATCATGCGGTTGTAATGCCTGATGCGAGTGTTGATGCTACAGTAAATGCTTTAGTTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACGATTGTTTTTGTTGGAGGCTCAAAACTGTGGGAAAGTAAACTTGTGGAGCGTGCCAAAGCTCTTAAAGTAAATGCCGGAACTGAACCAGATGCAGACCTCGGTCCAGTCATTAGCAAACAAGCAAAGGAGAGAATACACAGATTAATTCAATCTGGGGTTGAAAGTGGTGCAAGACTGGTGCTCGATGGAAGAAATATAGTGGTACCAGGATATGTATCTGGCAATTTTATTGGTCCAACCATCTTATCAGATGTCACTGCCAACATGGAGTGCTACAAGggataa 1176 0.4243 MATSHLTSQHRPSRIPNLIGGSFVDSKSLTFIDVINPATQEVVSQVPCTTDEEFKAAVSSAKKAFTSWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLRDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSVGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAITCGNTFILKPSEKVPGASVMLAELAMEAGLPEGVLNVVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYARAAAKGKRVQANMGAKNHAVVMPDASVDATVNALVAAGFGAAGQRCMALSTIVFVGGSKLWESKLVERAKALKVNAGTEPDADLGPVISKQAKERIHRLIQSGVESGARLVLDGRNIVVPGYVSGNFIGPTILSDVTANMECYKG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02630 391 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 17 390 IPR010061 GO:0004491
Cca08g02630 391 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Cca08g02630 391 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 1 390 - -
Cca08g02630 391 Pfam Aldehyde dehydrogenase family 23 390 IPR015590 GO:0016491
Cca08g02630 391 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 390 IPR016163 GO:0016620
Cca08g02630 391 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 19 259 IPR016162 GO:0016491
Cca08g02630 391 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 390 IPR010061 GO:0004491
Cca08g02630 391 CDD ALDH_F6_MMSDH 15 390 IPR010061 GO:0004491
Cca08g02630 391 SUPERFAMILY ALDH-like 10 390 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02630 Cca-Chr8 60733736 60740015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02630 7 390 Aldehyde Dehydrogenase Gene Family AT2G14170 82.031 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02630 K00140 - gmx:100783569 723.776