Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02628 ATGATGGATGCTCAAAGCAGCACAGAATTGGATGAAACTGCACAAATGCTTCCACCTCCCCCAGGCACAtttgtagatcgggaagaactcatccaacatgttggagactttgctgtgtcccaggggtatgtggtgactatcaagcaatccaagagggataaagtagttatactaggctgtgacagaggaggtgtctatcggaaccggcgaaaaccttctgaagagtcctcaacagaacatagtcgtaaaagaaaaactggttctcgtctaacaaattgtccttttgaagctgtgggcaagaaggatgatggtttgtgggtactcaccataaaaaatggaacacacaatcatgagcccttaaaggacatgtcagaacatccttctgcccgtcgcttcacagagggagaagttttgctcattaaagaaatgacagatgctgggttgaaacctcgacaaattctaaagcggctgagacaaaacaatccagaacttttATCAACACCAAAGCATGTTTATAATGTTAAAGCTAAGCTTAGACAAGGAAACACGAATGTTAGGAATTTCAAGTCATTGAGACATGAGAAGTCTGCCGTAAGAAACAACTATCTTGCTGTAATTGAACCATTGTGGCGGCAGTGCAACCCTCCAAGGGTTACCAATCTTATTGGAGGAAGATTTGTTGATTCACAGTCATGTGCATCAATTGACATTTTAAACCCTGCAAGCCAGCAAGTTGTTTCTCAAGTTCCAATGACTACAAATGAGGAGTTCAAAGCAGCAGTGTTTTCTGCAAAACGGGCCTTCTCATTGTGGCGTAACACACCAGTTACCACTCGTCAAAGAATCATGTTTAAGTTCCAAGAGCTTGTTCATAGAGACATTGATAAGGTTGCTATGAATATTTGTACTGAACATGGAAAAACACTGCAAGATGCACATTATGATGTGTTACGTGGGCTAGAGGTTGTTGAACACGCTTGTGGTGTAGGAAATTTGATAAAGGGGGATTTTGTACCTAATGTGTCCGATGGAATTGACACATACAGCATTAGAGAGCCACTTGGTATTTGTGCTGGTATCTGCTCTTTTGATTTTCCGGCTATGATTCCATTATGGATGTTTCCTATTGCTGTCACATGTGGCAATACATTTATTCTAAAGCCATCAGAGAAGAATCCAGGGGCATCTGTGATGCTGGCAGAGTTAGCAATTGAGGCTGGTTTACCTAATGGTGTGTTAAATATTGTTCATGGTACAAATGACATTGTCAATGCTATTTGTGACGATGATGATATAAAGGCTGTTTCCTTTGTTGGTTCAAATACAGTTGGTGCTTATGTATACACAAGAGCATCTACCAAAGGTAAACGTGTGCAGTCCAATATTGGAACCAAAAATCATGCCGTCATAATGCCTGATGCAAGAGTAGATGCTACTTTGAAAGCTTTGGTTACAGCTGGTTTTGGTGCAGCTGGACAGAAGTGCACAGCACTAAGTGCTGTTGTTTTTGTTGGAAATTTCAGTCAATGGGAAGATAAACTAGTAGAGCATGCGAAAAAACTTAAGGTCAATGCTGGAACAGAGCCAGATGCAGACCTTGGTCCTGTAATTAGCCAACAGGCAAAGGAACACACTTGCAGATTGATTCAAACAGGTGTGGAATCTGGGGCTAAACTAGTGCTTGATGGAAGAAATATTGTGGTTCCAGGTTATGAACAGGGAAACTTCATTGGTCCTACCATCTTGTCAGATGTCACAGTTGATATGGAATGCTACAAGGAGGAGATTCTTGGCCCAGTTCTTCTGTGTATGGAGGTTAACAGCATACATGAGGCGATAAACATCATCAATAGCAACGAATATGGTAATGGAGCATCCATCTTTACAACTTCTAGTGCAGCGGCAACAAGATTCCAGACTGAGGTTGAAGTTGGACAGGTTGGCATAAATGTCCCGATCTCTGTTTCATTGCCTTTTTCTTCATTCATTAGCTCCAGGCCATCTTTTGTTGGTGATTTGAATTTTGATGGGAGAGCTGGAATTCAGTTTTACACACAGATTAAGAGGGTCGCTAAACAATGGTCTGACACATTAGATGGAGATAAAGCAATTCTTGAAATACCTTTTACTTAG 2133 0.3282 MMDAQSSTELDETAQMLPPPPGTFVDREELIQHVGDFAVSQGYVVTIKQSKRDKVVILGCDRGGVYRNRRKPSEESSTEHSRKRKTGSRLTNCPFEAVGKKDDGLWVLTIKNGTHNHEPLKDMSEHPSARRFTEGEVLLIKEMTDAGLKPRQILKRLRQNNPELLSTPKHVYNVKAKLRQGNTNVRNFKSLRHEKSAVRNNYLAVIEPLWRQCNPPRVTNLIGGRFVDSQSCASIDILNPASQQVVSQVPMTTNEEFKAAVFSAKRAFSLWRNTPVTTRQRIMFKFQELVHRDIDKVAMNICTEHGKTLQDAHYDVLRGLEVVEHACGVGNLIKGDFVPNVSDGIDTYSIREPLGICAGICSFDFPAMIPLWMFPIAVTCGNTFILKPSEKNPGASVMLAELAIEAGLPNGVLNIVHGTNDIVNAICDDDDIKAVSFVGSNTVGAYVYTRASTKGKRVQSNIGTKNHAVIMPDARVDATLKALVTAGFGAAGQKCTALSAVVFVGNFSQWEDKLVEHAKKLKVNAGTEPDADLGPVISQQAKEHTCRLIQTGVESGAKLVLDGRNIVVPGYEQGNFIGPTILSDVTVDMECYKEEILGPVLLCMEVNSIHEAINIINSNEYGNGASIFTTSSAAATRFQTEVEVGQVGINVPISVSLPFSSFISSRPSFVGDLNFDGRAGIQFYTQIKRVAKQWSDTLDGDKAILEIPFT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02628 710 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 218 694 IPR010061 GO:0004491
Cca08g02628 710 Pfam Aldehyde dehydrogenase family 226 690 IPR015590 GO:0016491
Cca08g02628 710 MobiDBLite consensus disorder prediction 66 89 - -
Cca08g02628 710 MobiDBLite consensus disorder prediction 66 86 - -
Cca08g02628 710 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g02628 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 463 663 IPR016163 GO:0016620
Cca08g02628 710 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 222 665 IPR016162 GO:0016491
Cca08g02628 710 CDD ALDH_F6_MMSDH 220 694 IPR010061 GO:0004491
Cca08g02628 710 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 4 705 IPR010061 GO:0004491
Cca08g02628 710 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1 4 705 - -
Cca08g02628 710 SUPERFAMILY ALDH-like 209 696 IPR016161 GO:0016491
Cca08g02628 710 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 488 499 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02628 Cca-Chr8 60717265 60730490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02628 187 695 Aldehyde Dehydrogenase Gene Family AT2G14170 68.627 0.0 727