Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02621 ATGTTGTGCTATGCAATGGTAACCATTGTATTCCTCCCTCCAACGAATCCACTATCGTTTAGCTACCCCTCCTTTACCAGAAGTGATGGAGGGCTGAAGCTGGAAGGAGATGCAGTAGTGTCACGTTCAGAAATCCAAGTCACATTGAGCAGAATAGGCCAAAGCAACGAATACAGTGTTGGACGTGTCACACCACTTCATCACATGCTTCTCTGGGATATTAGCTCTAGAAAACTGGCAGATTTCATTACCAAATTCTCTTTTACTATCTTCTCTGAAGACTCACCCTATGGAGATGGTTTGGCATTCTTCTTGGCAGATCCAGGGCTTCCCCTTTTGAATAACATTAGAGAAGGAGGTGGTCTTGGCCTTGTTGATGGTGACCAAGTGTTGAACTCAACTCAGCACTCATTTGTGGCAGTGGAGTTTGACACCTTCAAAAATTCATGGGACCCCTATGGCCCTCATGTAGGTATCAATTTCAACTCCATGAAGTCTAACATAACGGCGTCATGGTTGACTCATGATATGTCACAGAGTAAAGTTTTTAATTGTAGCATTGAGTACAACTCCACCACTCTTAATTTAATGGTTTCTTTCACCGGCTACACTAGTGACAATACCCCAGTAGAAAAAAACATTTCATACAAAGTTGATTTGAGATATCACTTACCTGAGTGGGTTATGGTTGGGTTCTCGGCAGCCACGGGAAGTGTGTATGAGGTGAATATTCTCAAGTCATGGTCATTTAGTTCAAGCTTACAAATTAGTGATAGTGGTGATGATATTAATGATGATAATAAACTGGGTAAGGGGCTAGGAATTGGAGTGGGTTTGTGTGTGGCTTTTTTAGGGTTGGCTTGTTTTCTGTTGTGGAAAAGGATTAAAAGAAAGGAAGATGTTTTGGTAGAATTTGATGTGAAAATGGATGATGAATTCCAAAAGGGCATTGGACCCAAGAGGTTTGGCTACAATGAACTTGAAAGTGCAACAAGTAAATTTGCACAGTCAGAGAAGCTTGGACAAGGTGGTTTTGGTGGTGTGTATAAAGGTTTTCTGAAAGATTCAAACTCCTATGTTGCAATCAAGAGGATATCAAGCGAGTCTAAGCAAGGGGTTAAAGAATATGCTACTGAAGTCAAGATCATTAGCCAATTGAGGCACAAGAATTTGGTGCAACTCCTTGGTTGGTGCCATAGGAAAAATGACCTCCTTCTCATATATGAATTCATGCCAAATGGAAGCTTAGATTCCCATTTATATGGTGGGAAAGGCTTCTTGACATGGCCTATAAGGTATAACATAGCTCTAGGCTTGGCTTCAGCATTGCTCTACCTGCAAGAAGAGTGGGAACAATGTGTCCTCCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCAAGTTTCAATGCTAAGCTTGGTGACTTTGGTTTGGCTAGGTTGGTGGATCATGAGAAAGGGTCACAAACCACACTTATAGCTGGGACAAGAGGGTACATTGCACCAGAATATGTGATCACAGGAAAATCTTATAAGGAGTCTGACATATACAGCTTTGGGGTTGTTTTATTGGAGGTAGCAAGTGGAAGAAAAGCCATTGACCTAAATGCCAAGGATGGTCAAGTAACAATTGTTGAGTGGGTATGGGAGATGTATGAATTGGGAGAGTTACGTAAAGTAGCAGACCCAAAATTATGTGGAGAATTTCATGAGGAACAAATGGAAAGATTAGTGGCTACAGGCCTTTGGTGTGCTCATCCAAATTATAGATTCAGGCCTTCTGTGATGCAAGTGATCCAAATGCTAAAATTTGAAGCCGAATTGCCCGTTCTGCCAAAATGGATTAAAAGATTGTTTCCACTCTCCACTTGCACTTCCATTCGCTTTCTCTTTCTTCTTCATCTGGTGGATCCTTACACAGCATCGCACAGGAGTAGAAAAATTATGAGTTCCCAAGGTATTGTTGAAGACTGCCTAGGATGGGCAGCAAGAGATGCATCCGGAGTTCTCTCACCTTACAAATTCAGTCGCAGGACTCTTGGGAACGAAGATGTTTATATTAAAATTACGCATTGCGGTGTTTGCTATGCTGATGTAGCTTGGACGCGGAATAAACTCGGTGACTCAAAGTACCCCGTTGTGCCTGGTCATGAGATTGCTGGCATTGTGACAAAAGTTGGCTCCAATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGTAGGGATTGTGAATATTGTAATGACAGGCTAGAAGTTCATTGTACCAAAGGATCAATTTACACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCAAGTTACATAGTAGTCCATGAGAGGTATTGCTTCATAATCCCAAAAAGCTATCCATTGGCTTCAGCAGCTCCTTTGCTGTGTGCTGGAATTACTGTTTATTCACCGATGGTGCGCCACAAGATGAATCAACCTGGTAAATCCCTAGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAATGTAACAGTTTTTAGCACTAGCATATCCAAGAAAGAGGAGGCACTGAGCCTACTTGGTGCGGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGAAGGTAAGCATAGCATGA 2682 0.4176 MLCYAMVTIVFLPPTNPLSFSYPSFTRSDGGLKLEGDAVVSRSEIQVTLSRIGQSNEYSVGRVTPLHHMLLWDISSRKLADFITKFSFTIFSEDSPYGDGLAFFLADPGLPLLNNIREGGGLGLVDGDQVLNSTQHSFVAVEFDTFKNSWDPYGPHVGINFNSMKSNITASWLTHDMSQSKVFNCSIEYNSTTLNLMVSFTGYTSDNTPVEKNISYKVDLRYHLPEWVMVGFSAATGSVYEVNILKSWSFSSSLQISDSGDDINDDNKLGKGLGIGVGLCVAFLGLACFLLWKRIKRKEDVLVEFDVKMDDEFQKGIGPKRFGYNELESATSKFAQSEKLGQGGFGGVYKGFLKDSNSYVAIKRISSESKQGVKEYATEVKIISQLRHKNLVQLLGWCHRKNDLLLIYEFMPNGSLDSHLYGGKGFLTWPIRYNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYVITGKSYKESDIYSFGVVLLEVASGRKAIDLNAKDGQVTIVEWVWEMYELGELRKVADPKLCGEFHEEQMERLVATGLWCAHPNYRFRPSVMQVIQMLKFEAELPVLPKWIKRLFPLSTCTSIRFLFLLHLVDPYTASHRSRKIMSSQGIVEDCLGWAARDASGVLSPYKFSRRTLGNEDVYIKITHCGVCYADVAWTRNKLGDSKYPVVPGHEIAGIVTKVGSNVHRFNVGDHVGVGTYVNSCRDCEYCNDRLEVHCTKGSIYTFNGVDFDGTITKGGYSSYIVVHERYCFIIPKSYPLASAAPLLCAGITVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKEEALSLLGADKFVVSSNQEEMKVSIA 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02621 893 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 834 861 IPR029752 -
Cca08g02621 893 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 717 731 IPR002328 GO:0008270|GO:0016491
Cca08g02621 893 ProSiteProfiles Protein kinase domain profile. 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02621 893 ProSitePatterns Legume lectins alpha-chain signature. 224 233 IPR000985 -
Cca08g02621 893 PANTHER - 24 616 - -
Cca08g02621 893 CDD STKc_IRAK 340 604 - -
Cca08g02621 893 Pfam Alcohol dehydrogenase GroES-like domain 684 797 IPR013154 -
Cca08g02621 893 Gene3D - 662 813 - -
Cca08g02621 893 SMART serkin_6 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02621 893 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Cca08g02621 893 CDD CAD1 661 889 - -
Cca08g02621 893 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 804 888 IPR036291 -
Cca08g02621 893 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Cca08g02621 893 SUPERFAMILY Protein kinase-like (PK-like) 316 605 IPR011009 -
Cca08g02621 893 Gene3D - 814 890 - -
Cca08g02621 893 SUPERFAMILY GroES-like 665 832 IPR011032 -
Cca08g02621 893 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 257 IPR013320 -
Cca08g02621 893 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 24 616 - -
Cca08g02621 893 Pfam Legume lectin domain 18 260 IPR001220 GO:0030246
Cca08g02621 893 Gene3D - 16 265 - -
Cca08g02621 893 Pfam Protein kinase domain 335 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02621 893 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Cca08g02621 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Cca08g02621 893 Gene3D Transferase(Phosphotransferase) domain 1 411 617 - -
Cca08g02621 893 CDD lectin_legume_LecRK_Arcelin_ConA 18 254 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02621 Cca-Chr8 60613288 60627452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02621 9 613 Receptor kinase-like Gene Family AT5G10530 46.452 2.51e-166 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca08g02621 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02621 - - gmx:100780181 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01401 09 37320358 37322289 Cca08g02621 08 60613288 60627452 PCT
Cca08g02621 08 60613288 60627452 Cca09g01400 09 37303826 37305844 PCT