Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02611 ATGGAGAACTACTCATACCAATCGTACCCAGACTCAGGGGAGTCATCACCGCGTTCAAGAGAGATAGAATTCGAGAACCCACCGCCATGGGACGAGCAGAACCAAAACTACAAAGCAAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCACGCACCCACGACAACCAGCTCTCCTACGTCGGAGGAGAGACCAAGATCCTGGCCGTCGACCGCACCGTCAAGTTCCCGGCCATGCTGGCCAAGCTCTCCGCCCTATGCGACGCCACTCCCCACGACACGCTCACCTTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGACCGACTCTACCGCGCTCCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCTCCGAAACTCCTCCTTCTCTCCCCGCCTCCGACCCCGTTAAGCCCAACAACGTCGACTTCCTCTTCGGTCTCGACAAATCCGCTGCTCCTCCTCCGCCGCCGCCGCTCAAATTCCACGATCAgccgccggagcctctgccgccgccgccgctgccgGAGTACAATTCGCGGTTGAATTTAAACCCTAACGTCGCGGTTTCGGATCCAAACGCGATTCAGAGGCAGTTGCAGCAGATGCAAATCGCGGAGAACGACCAAGCTGCTTACCGGAGGAAAAGCGAGGATAACTACCCCGCCGCCGGCGATTATTATATCCAGAAAGTACCGGAGAAGTTTCCTCCGACGAGTTTCCCGGCCTCCGCGCCGGGCTATTGGCCGGAGAAGCGTGTCTCCGGCGAGTCTTATCCGCCGGCGGTTTCCACCGGAGATGCGCCGGTTTACATGATTCCGGCGCCGGGGACGTTCTACCACACGCCGGTGGTGCGGCCGCCGGTTACGCAGGGGTACTACGCGGTGCAGCGAATGGCTTCTGATGGTTACCGTGAGGCGCCGGTGTACGGCGGCGTTCCGGCGCCTAAAACAGCGGTTGCGGCGAGTTTGATGGCGGCGCAGACTGTTAAGGCTCCCGCGTATACGGAAGGATTCGGTGTGGTGCGGCCAGGTGGGATAGCGGATAGTACGAGTGCTCCGTACGCACAGGTGGCGTACGATAGTGCGAGTGGGAGGCAGGTGTACTATACTGCGCCGGGTGGCGTTGTGCACGCCCCTCCGTACCAAGGGGTTTTTCCACCCGTCACCGCTGATATGAGACCGAGTGGGGCTTCGTTGGGCCAGGATGTTAAAGTTATAAGCAAGGTTACTCAAGGTTCAGTGTGA 1308 0.5757 MENYSYQSYPDSGESSPRSREIEFENPPPWDEQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDRTVKFPAMLAKLSALCDATPHDTLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRAPARPARMRLFLFLSETPPSLPASDPVKPNNVDFLFGLDKSAAPPPPPPLKFHDQPPEPLPPPPLPEYNSRLNLNPNVAVSDPNAIQRQLQQMQIAENDQAAYRRKSEDNYPAAGDYYIQKVPEKFPPTSFPASAPGYWPEKRVSGESYPPAVSTGDAPVYMIPAPGTFYHTPVVRPPVTQGYYAVQRMASDGYREAPVYGGVPAPKTAVAASLMAAQTVKAPAYTEGFGVVRPGGIADSTSAPYAQVAYDSASGRQVYYTAPGGVVHAPPYQGVFPPVTADMRPSGASLGQDVKVISKVTQGSV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02611 435 SMART PB1_new 53 145 IPR000270 GO:0005515
Cca08g02611 435 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 428 - -
Cca08g02611 435 Coils Coil 216 236 - -
Cca08g02611 435 MobiDBLite consensus disorder prediction 1 15 - -
Cca08g02611 435 Gene3D - 59 144 - -
Cca08g02611 435 PANTHER OS05G0427100 PROTEIN-RELATED 1 428 - -
Cca08g02611 435 MobiDBLite consensus disorder prediction 174 193 - -
Cca08g02611 435 MobiDBLite consensus disorder prediction 1 33 - -
Cca08g02611 435 CDD PB1_UP2 42 143 - -
Cca08g02611 435 SUPERFAMILY CAD & PB1 domains 54 149 - -
Cca08g02611 435 Pfam PB1 domain 54 143 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02611 Cca-Chr8 60446442 60448377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02611 37 143 MAP Kinase Kinase Kinase AT5G57610 45.794 2.31e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02611 - - gmx:100780332 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01394 09 37178842 37189944 Cca08g02611 08 60446442 60448377 PCT