Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02602 ATGAGGAGCTTTCATATGGACATTTCATCGATCAGAGGGTTACCTGAACTGGGGGTAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACTCTATTGATACATGTGCTGCTTTTGAAGATATTTTGCAAAAGCACTCGTTATCTGATAACTCAAACTTCAACCCCAAAACATCCATGGAAACATCACCAACTGGAAATGAAAGACCTGCAAAACAGCTCAGAAACAACAACTGGAATCACAACAAAAGTCAACAGATCTCGGACACACAATTTGCTTCATGCTCAAATCTTCTTTCGTTTGTTAACTCGAATTACACAAGTGAATTGGGAGTAGTGAAGCCTAAGGTGGAGATGGTGTGTCCTAAAATCAATAACAGCACTCTTGCTGACATGTTGATCTCTCAAGGAACCTTGGGGAATCAAAACTATGTCTTCAAGGCTTCCCAAGAGGCCAAAAATATTGAGACACGTCCTAAACTTTCTCAACCTCAAGATCACATAATTGCTGAGAGGAAGCGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCTCTGCTATCTAGTGAAGCTGAAGATTCTTCTTCTTCAGACACTGGAGGTACAGTTGATGAGGCACTACCTGAAATTGAAGCACGATTTTGTGAAAGAAATGTCCTCATAAGAATACACTGTGAGAAGAACAAAGGCGTCATAGATAAAACAATCAGCGAAATTGAGAAACAGCATCTGAAAGTCATCAATAGCAGTGCCATGACATTTGGAAGTTTCATCCTTGATATAACCATTATTGCTCAGATGGATACGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCATATTTCGTGTGA 1032 0.405 MRSFHMDISSIRGLPELGVIEDPNFLHQWQLNSIDTCAAFEDILQKHSLSDNSNFNPKTSMETSPTGNERPAKQLRNNNWNHNKSQQISDTQFASCSNLLSFVNSNYTSELGVVKPKVEMVCPKINNSTLADMLISQGTLGNQNYVFKASQEAKNIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSLLSSEAEDSSSSDTGGTVDEALPEIEARFCERNVLIRIHCEKNKGVIDKTISEIEKQHLKVINSSAMTFGSFILDITIIAQMDTEFCMTVKDLVRSLRSAFSYFV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02602 343 Gene3D - 162 234 IPR036638 GO:0046983
Cca08g02602 343 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 7 342 - -
Cca08g02602 343 CDD bHLH_AtNAI1_like 166 238 - -
Cca08g02602 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Cca08g02602 343 SMART finulus 169 218 IPR011598 GO:0046983
Cca08g02602 343 PANTHER BHLH TRANSCRIPTION FACTOR 7 342 - -
Cca08g02602 343 MobiDBLite consensus disorder prediction 51 77 - -
Cca08g02602 343 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Cca08g02602 343 Coils Coil 202 229 - -
Cca08g02602 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02602 Cca-Chr8 60363087 60365708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02602 6 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.113 5.09e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g02602 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02602 - - gmx:100798018 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01385 09 37074553 37077581 Cca08g02602 08 60363087 60365708 PCT