Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02600 ATGCACGTGGATCATTTTCTGTGTGAAACCAAACCCAAATTTCAACATTACAACCGACCCTCCATTCCATTCCCACCCACTCACCCAACTCTAACAACCCCCATCACCGCCGGCATGTTCGCCGGAGATATTTTCCGGCACGGCTCACCGCCCATTATTCTCACCACTCTGTTATTCCTCTGCCTCGTTGCTCCCTCCCTCTCAGATGAGCTTCAACCACTCATGAAGTTCAAGTCCTCTATCCAAAGTTCCAATGCAAACGTTTTCACTTCATGGACTCAAGCAAACTCTCCCTGCCAATTCACCGGGATTTCATGCAATTCCAAAGGTTTTGTCTCAGAAATCAACCTTGCGCAGCAACAACTTGAGGGCACTGTTCCTTTTGATTCGCTCTGCGAGCTTCAATCGCTGGAGAAGATATCTTTGGGGTCCAACCACTTGCATGGCAGCATCAGTGAGGGGTTGAGGAAGTGCACCAACTTGAAGCACTTGGATTTGGGCATGAATTTCTTCACTGGTGCAGTGCCTGATTTGTCACCTTTGCACAAGCTGGAGTCCTTGAATTTAAACTCTAGTGGAGTTTCTGGTGCATTTCCATGGAAATCATTGGGGAATTTAACAAGTCTTGAGTTCCTGAGTCTTGGAGATAACCTGTTGGAGGAATCTCCTTTCCCTTTGGAGGTCTTAAGGCTTGAAAAGTTGTATTGGCTTTACCTCACAAACTGCAGCATCACTGGGAATATTCCTTTGGGGATAGGGAATCTCACTCAGCTTCAGAATCTCGAGCTTTCTGACAACCATTTGTCTGGCGAGATTCCAGCTGATATCGGAAAGCTTCAAAAGCTGTGGCAGCTTGAGTTGTATGATAACTATTTGAGTGGGAAACTCCCTGTTGGATTTGGCAACCTTACTAGTCTTGTTAACTTTGATGCTTCTAGTAATCAGCTTGAAGGTGATCTTTCTGAGGTGAGGTCCTTGACAAACCTTGCATCCCTTCAGCTTTTTTGGAACAAGTTCTCAGGTGAAATTCCAAAGGAGCTTGGAGATTTCAAAAATCTCACAGAACTTTCTCTTTATGGTAACAATCTCTCCGGTCCTCTCCCTCAGAAGCTAGGATCATGGCTAGGCATGACATACATTGATGTTTCAGACAATTCTCTTTCTGGTCCTATACCACCTCACTTGTGCAAGAACAACCAAATTGATGAACTAGCGCTCTTGAACAACACCTTTACTGGAACTATACCAGAAACATATGCAAATTGCACATCTTTGGCTCGTTTTCGCCTCAGTAGGAATTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCATGCCAAATCTGAAACTACTTGATCTTGCAATGAACCAGCTAGAAGGTCCAGTGACATCTGATATTGTCAAAGCAAAATCTCTGGATCAATTGTTGTTATCTAACAATAAGTTCTCAGGTGTGTTACCATTGGAAATCTCAGAAGCATATTCACTGGTGTCAATTCAGCTAAGTTCAAATCAAATTTCTGGGCACCTCCCAGAAAACATTGGCAACTTGAAGAAACTAACTAGTCTTAATTTGAATGGGAACAAACTCTCTGGTATTGTACCAGATTCCATTGGTTCTTGTACTTCTCTTAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGACTATACCATCTAGTATTGGTTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACAGGTTTTCTGGTGAAATTCCAACTAGTTTATCATCTCTGAAACTTAGCCTTCTTGATTTATCAAACAACCAGTTGCTTGGTTCCATACCAGAATCACTAGCTATTTCAGCCTTCAAAGATGGATTTATGGGAAACCCTGGCTTATGCAGCCAGACTTTGAAAGGTTTCAGATCATGTTCAGTGGAATCTAGAAGCTCCAGGAGTCTCAGAAACATAGTAGTCTGTTTCATTGCTGTTGTAATGGTTCTGCTTGGAGCATGTTTTGTCTTCACAAAACTGAGGCAGAACAAGTTTGAGAAGCCACTCAAGACTACTTCCTGGGAAGTGAAGCAGTACCATGTGCTAAACTTCAATGAGAATGAAATCGTTGATGGGATCAAGGGTGAGAATTTGATTGGAAAAGGAGGATCCGGGAATGTCTATAGGGTTGTGCTTAAAAATGGGGTAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGAGAGGGAAAGTTGTAGGAGCACCTCAGCTATACTAAGGAGGAGTTCAAGGTCACCTGAGTATGATGCAGAAGTGGCCACTCTTAGCTCTATAAGGCATGTGAACGTGGTGAAGCTGTATTGTAGCATCACaagtgaagatagcagtttgcttgtgtatgagttcatgccaaatgggagcttgtgggacaggttgcacacctgcaagaagaagtctgagatggggtgggtggttaggtatgacattgcattgggtgctgctagaggattggagtaccttcaccatgggtgtgatagacctgttatacatagggatgtcaaatcaagtaacatattgctggatgaggaatggaagccaagaattgctgattttggccttgccaaGATTCTGCATGGAGGAGCAGGCAATTGGACCAATGTCATTGCTGGAACACTTGGATACATACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTGCTGATGGAGTTGGTAACTGGGAAGAGGCCAATGGAGCCAGAATTTGGAGAGAACCATGACATTGTGTATTGGGTGTGCAGCAAAATTAGGAACAGAGAAGATGCTCTTGAATTGGTGGATCCAACCATTGCAAAACATTTCAAAGAGGATGCCATGAAGGTGTTAAGAATTGCAACATTATGCACGGCCAAAATTCCAGCTTCAAGACCGTCAATGAGAATGTTGGTTCAAATGCTGGAAGAAGCAGACCCTTGTTCCACACCCAAAATCATTGTGACCATTGATGCTTAA 3018 0.3963 MHVDHFLCETKPKFQHYNRPSIPFPPTHPTLTTPITAGMFAGDIFRHGSPPIILTTLLFLCLVAPSLSDELQPLMKFKSSIQSSNANVFTSWTQANSPCQFTGISCNSKGFVSEINLAQQQLEGTVPFDSLCELQSLEKISLGSNHLHGSISEGLRKCTNLKHLDLGMNFFTGAVPDLSPLHKLESLNLNSSGVSGAFPWKSLGNLTSLEFLSLGDNLLEESPFPLEVLRLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLSGEIPADIGKLQKLWQLELYDNYLSGKLPVGFGNLTSLVNFDASSNQLEGDLSEVRSLTNLASLQLFWNKFSGEIPKELGDFKNLTELSLYGNNLSGPLPQKLGSWLGMTYIDVSDNSLSGPIPPHLCKNNQIDELALLNNTFTGTIPETYANCTSLARFRLSRNSLSGVVPSGIWGMPNLKLLDLAMNQLEGPVTSDIVKAKSLDQLLLSNNKFSGVLPLEISEAYSLVSIQLSSNQISGHLPENIGNLKKLTSLNLNGNKLSGIVPDSIGSCTSLNEINLAGNSLSGTIPSSIGSLPTLNSLNLSSNRFSGEIPTSLSSLKLSLLDLSNNQLLGSIPESLAISAFKDGFMGNPGLCSQTLKGFRSCSVESRSSRSLRNIVVCFIAVVMVLLGACFVFTKLRQNKFEKPLKTTSWEVKQYHVLNFNENEIVDGIKGENLIGKGGSGNVYRVVLKNGVEFAVKHIWTSNPSERESCRSTSAILRRSSRSPEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFMPNGSLWDRLHTCKKKSEMGWVVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILHGGAGNWTNVIAGTLGYIPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENHDIVYWVCSKIRNREDALELVDPTIAKHFKEDAMKVLRIATLCTAKIPASRPSMRMLVQMLEEADPCSTPKIIVTIDA 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02600 1005 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524
Cca08g02600 1005 Pfam Leucine rich repeat 402 459 IPR001611 GO:0005515
Cca08g02600 1005 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Cca08g02600 1005 Gene3D Ribonuclease Inhibitor 396 467 IPR032675 -
Cca08g02600 1005 Gene3D Ribonuclease Inhibitor 324 395 IPR032675 -
Cca08g02600 1005 SMART LRR_sd22_2 518 550 - -
Cca08g02600 1005 SMART LRR_sd22_2 255 270 - -
Cca08g02600 1005 SMART LRR_sd22_2 134 157 - -
Cca08g02600 1005 SMART LRR_sd22_2 158 189 - -
Cca08g02600 1005 SMART LRR_sd22_2 350 365 - -
Cca08g02600 1005 SMART LRR_sd22_2 206 228 - -
Cca08g02600 1005 SMART LRR_sd22_2 303 331 - -
Cca08g02600 1005 Gene3D Phosphorylase Kinase; domain 1 711 795 - -
Cca08g02600 1005 SMART LRR_typ_2 518 541 IPR003591 -
Cca08g02600 1005 SMART LRR_typ_2 134 158 IPR003591 -
Cca08g02600 1005 SMART LRR_typ_2 566 590 IPR003591 -
Cca08g02600 1005 SMART LRR_typ_2 350 374 IPR003591 -
Cca08g02600 1005 SMART LRR_typ_2 206 231 IPR003591 -
Cca08g02600 1005 SMART LRR_typ_2 255 279 IPR003591 -
Cca08g02600 1005 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 49 998 - -
Cca08g02600 1005 SMART serkin_6 703 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02600 1005 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 49 998 - -
Cca08g02600 1005 SUPERFAMILY L domain-like 408 622 - -
Cca08g02600 1005 Pfam Protein kinase domain 706 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02600 1005 SUPERFAMILY L domain-like 229 462 - -
Cca08g02600 1005 Gene3D Transferase(Phosphotransferase) domain 1 796 998 - -
Cca08g02600 1005 Gene3D Ribonuclease Inhibitor 66 224 IPR032675 -
Cca08g02600 1005 Gene3D Ribonuclease Inhibitor 468 710 IPR032675 -
Cca08g02600 1005 Pfam Leucine rich repeat N-terminal domain 68 107 IPR013210 -
Cca08g02600 1005 ProSiteProfiles Protein kinase domain profile. 703 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02600 1005 SUPERFAMILY Protein kinase-like (PK-like) 689 989 IPR011009 -
Cca08g02600 1005 SUPERFAMILY L domain-like 64 282 - -
Cca08g02600 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Cca08g02600 1005 Gene3D Ribonuclease Inhibitor 225 323 IPR032675 -
Cca08g02600 1005 CDD STKc_IRAK 709 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02600 Cca-Chr8 60341716 60345629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02600 54 1005 Receptor kinase-like Gene Family AT1G09970 56.608 0.0 1056
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g02600 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02600 - - ccaj:109814095 1969.13