Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02589 ATGCCTTCAGAAATGAAACCTGCCACAAGAAATTTGGATGTTCTCCTGACCTTGTGGACATTTTTGCGTCTCTTTATGGCTGGTTATGGTGCTGAAAGTGAAATCTATTGCTTGCAAACCATCAAGAAATTGGACCCGTTTGGTCACTTCTCTAGCTGGGATTTCGAGAGCATCACTGAAGGTGAAATATGCCGATTTAGCGGTGTGGAATGCTGGAATTATGTGGAAGATACAGTAATCGGTCTTTCGCTTTCTAATATGGGGTTGAAGGGCCAGTTTCCTCTTTGCATTGAAAATTTCACATGGTTGCAGACTCTGAACCTCTCACACAACGAGCTTTTTGGATATATCCCATCAGATATATCAACAAAGCTTCCACATCTGACCTTACTTGATCTCTCAAGCAACAATTTCAATGGTGAGATTCCAAAGGGTATAGCCAAATTGTCAGGCTTAATTACTCTTAGACTTGATGGCAACCAGTTAACTGGCCAAATCCCACAAGAACTTGGGTTGCTTCCCAGGCTTGGAGATTTTAGTGTTGCAAACAACTTGTTAGAAGGGCCAGTGCCTGTTTTTGTCAGCAATGTTAATGTGAGTTTGAGCTATGCCAACAATATTGGACTCTGTGGGGGAGCACTACTAGAAAGCTGTGATGAGAGCTTGTTTGGTAGATCGTTTTGGTATAGTTTTATTATTGGTTTTGTTTCTTCAGCAACGTGTGTCCTAGTTGCTTTCATATACTATTATGCACCCTGGACAGAATTCAAAAAGAGAAGTAACGCTGTACATCCTTTAAGAAACAATCAGAACCACCAAAAAAACACTAGACAAGAAACTCTGGCCCTGCAAGAGCAAGCAAGCAAAGAGCTATCAAGATCGTTGGAGAGATTGATTCCTAAAATGAGCTTCGTGGAATTATGCAAGGCAACTGATTACTTTAGCCCAGATAACGTGTTGGGGATAGGAACGACAGGGATTATGTACAAGGCAAAGGTACCAAATAACTGTTTTCTGGCAGTGAAGAGACTATACGATGCTGAGAAGTACAAGAGGGAATTCCTACTTGAAACAATGATTACAGGGAGACACAGGCACACAAACATGGTTCCACTGCTTGGATTCTGCATAGAAAAAAATGAAAGGATTTTGGTGTACAAGTACATGTCTAATGGAAGGCTCAGTGATTGGCTACATTCTGATGAAGGACACCAAGCAGTAAAATTAGAATGGCCAATGAGAATTCACATTGCAATTGGGCTTTCAAGAGGTTTATCTTGGCTCCATAAAAGGTGCAAGATAGTTCATCTCAATTTAGACTCAGAGTGTGTCTTGCTGGACCAGAATTTTGGGCCAAAAATTTCCAATTTTGGCAAGGCAAAGTTCCTACACCAGACGGTTGAAGATCATGTGAGGATCAAATTGTTTTTGATTGGTGGACTTGGGGTGAAGGGTTCTGCTGAGAAGGATGTGTATGACTTTGGAATGATCCTTTTTGAACTCATAACAGGGAAAAGATTAAGTCCAATGACTGATTCTTCTGACAGTGTTAATGGGCATTTGGTGAACTATATCAGTAACAACTTGTTCACTGGTCCTGTTGACTTTTATGATGCCATTGACCAATCTTTGATTGGGACGGGTTTTGATGATAAAATCCATCGTCTACTCGAAGTTGCATGTGACTGTGTTAAGGCGTCTTCAAAGCAAAGGCCAAAGATGGTTGATGTGCACAAAAGTTTAAGAGCACTGTGGGAGGGCTATAAACCTTGTTTTGGTTCTGAGAATCTGATACCTTATGGCCAGATAACATGTATTTGTCGAAATTAA 1830 0.4082 MPSEMKPATRNLDVLLTLWTFLRLFMAGYGAESEIYCLQTIKKLDPFGHFSSWDFESITEGEICRFSGVECWNYVEDTVIGLSLSNMGLKGQFPLCIENFTWLQTLNLSHNELFGYIPSDISTKLPHLTLLDLSSNNFNGEIPKGIAKLSGLITLRLDGNQLTGQIPQELGLLPRLGDFSVANNLLEGPVPVFVSNVNVSLSYANNIGLCGGALLESCDESLFGRSFWYSFIIGFVSSATCVLVAFIYYYAPWTEFKKRSNAVHPLRNNQNHQKNTRQETLALQEQASKELSRSLERLIPKMSFVELCKATDYFSPDNVLGIGTTGIMYKAKVPNNCFLAVKRLYDAEKYKREFLLETMITGRHRHTNMVPLLGFCIEKNERILVYKYMSNGRLSDWLHSDEGHQAVKLEWPMRIHIAIGLSRGLSWLHKRCKIVHLNLDSECVLLDQNFGPKISNFGKAKFLHQTVEDHVRIKLFLIGGLGVKGSAEKDVYDFGMILFELITGKRLSPMTDSSDSVNGHLVNYISNNLFTGPVDFYDAIDQSLIGTGFDDKIHRLLEVACDCVKASSKQRPKMVDVHKSLRALWEGYKPCFGSENLIPYGQITCICRN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02589 609 Gene3D Transferase(Phosphotransferase) domain 1 389 590 - -
Cca08g02589 609 Gene3D Ribonuclease Inhibitor 37 220 IPR032675 -
Cca08g02589 609 Gene3D Phosphorylase Kinase; domain 1 271 388 - -
Cca08g02589 609 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 17 584 - -
Cca08g02589 609 SUPERFAMILY L domain-like 43 205 - -
Cca08g02589 609 ProSiteProfiles Protein kinase domain profile. 314 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02589 609 Pfam Protein tyrosine and serine/threonine kinase 318 581 IPR001245 GO:0004672|GO:0006468
Cca08g02589 609 PANTHER RECEPTOR-LIKE PROTEIN 55 17 584 - -
Cca08g02589 609 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Cca08g02589 609 SUPERFAMILY Protein kinase-like (PK-like) 293 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02589 Cca-Chr8 60244939 60247361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02589 32 596 Receptor kinase-like Gene Family AT3G28450 35.324 9.45e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Cca08g02589 PK_Tyr_Ser-Thr 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02589 - - gmx:106795644 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01369 09 36890307 36891074 Cca08g02589 08 60244939 60247361 PCT