Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02584 ATGAGTAATAATGATAGTAATTGGGTGTTGGATTATGATTACCTAGACAACATTCCCCTCCCTACCCTTGACCCACCCAATTTCTCTTGGTCCTCCTCTCCTCCTCCCACACTCAGTGTGGAGCTAGATGACTCATTTAGAAATTCGGATGGTTTCAAGGAAAATGGGTCAAGAAAACGTTTGAGGTCATCTGGTTCCAAAGCATGTAGAGAGAAAATGAGAAGGGATCGACTGAATGACAGGTTTTTGGAACTGGGGTCTATCCTGGACCCTGTAAGGCCTCTCAAAATGGACAAGGCTGTTATATTAAGTGACGCAGTTCGTTTGGTGTCTCAGTTAAGAGAGGAAGCTCAGAAGCTCAAAGACTCCACTGAGACTCTACAAGACAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAGCAGAGACTAAAAGCAGAGAAAGATAACCTGGAGCAGAAGCTTAAAGCCTTGAGTTCACAACCTAGCTTCTTTCCTTCGCTTCCTGCAGCAGGACAAGTTGTTGGTAGCAAACTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCACGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCACAGGATCATGTACTCAGGCCTCCAGTTGCATAA 651 0.4531 MSNNDSNWVLDYDYLDNIPLPTLDPPNFSWSSSPPPTLSVELDDSFRNSDGFKENGSRKRLRSSGSKACREKMRRDRLNDRFLELGSILDPVRPLKMDKAVILSDAVRLVSQLREEAQKLKDSTETLQDKINELKAEKNELRDEKQRLKAEKDNLEQKLKALSSQPSFFPSLPAAGQVVGSKLVPFMGYPGVATWQFLPPAAVDTSQDHVLRPPVA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02584 216 Gene3D - 65 144 IPR036638 GO:0046983
Cca08g02584 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 141 IPR036638 GO:0046983
Cca08g02584 216 MobiDBLite consensus disorder prediction 41 70 - -
Cca08g02584 216 PANTHER BHLH TRANSCRIPTION FACTOR 2 216 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca08g02584 216 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Cca08g02584 216 SMART finulus 68 119 IPR011598 GO:0046983
Cca08g02584 216 MobiDBLite consensus disorder prediction 46 70 - -
Cca08g02584 216 CDD bHLH_AtILR3_like 67 142 - -
Cca08g02584 216 Coils Coil 103 165 - -
Cca08g02584 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Cca08g02584 216 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 2 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02584 Cca-Chr8 60203294 60206080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02584 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.692 4.09e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g02584 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02584 - - gmx:100790993 340.887