Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02578 ATGCTTGAGGTTTGGCTTTCTCTCAAGAAGACACTTCAATGCAAACCACACCCAAATCAAGTTCACGATCCAAAGACAATTAGGTTGCAAAAGGGTAATCAGAGAACAAAGTCAGGTAATCTTGAGAGTTCAAACACCAAAGATTTCATCCAAGGAAGCAAAAGACACTTAAAAAATCAACCAAGTTTCAAAGGGGACATTGACATCACTCATCCCATTACACATGAAATTGTTCTTGATAGGTCAAACAGTAAAATTTGTCGATGTTGTCCTTGTCCACAAAGCAGTAGCGATAGTAAAGGTTCGGAGGGTTCTCATAGAACAGGAAGGTTAGCTACATCTTCAAAGATAACCAAGTCTCTTGATTACAATGAAGCAAGTGTTTCCTCCAACACAAGGATGTTGGTTCAGATGGACTCTGATGGCTTTTCAACATTGACATGTCATAAATGTGGAGAGAAATTAAAAAATCTTGATGCTGTAGAAGCACACCATATCTCCGAGCATTCAGTCACTGAACTTGAAGAAGATTCATCTAGACAGATTATAGAAACAATATGTGGAACAAACTCCGTTAATTCTGAAAACATGTTGGGGAAGATTGATTGCATCTTAAAGGTTCTGAACATACCAAAAACCTTTGCTTGCTTTGAGGAATATAGAGAAATGGTGAAAGATAAGGCTGATAAGCTACAAAGGAAACACCCTCGTTGTGTGGTTGATGGAAATGAACTTTTAAGGTTCCATGGCACAACTATTGCATGCTCTCTTGGCAAAAACAGTTCTTATAGTCTATGCACTTTAGACTACTGTGGTATATGTCAAATTCTGAGACATGGTTTTTCCACCAACAAGGAATTCCGAGGTGCATTGGGGGTTTACACCGCTTCCACAAGTGGGAAAGCCTTTGATTCCATTTCCATTATGACATCACATGAGAGACCCTTTCCAAGAAAATCTGTCATAGTATGCAGAGTAATAGCTGGGAGAATTTATAGTCCTATTGAAGAAATTGAAGAAAAGGTTGATTCAGAGTTTGATTCATTGGCAGAAAAAACAAGTGGTTATTCAGATGTTGAAGAACTCTATGTGTTAAATCCCAAAGCCTTGCTTCCTTGCTTTGTGGTAATTTTCAAGCAACAAACAGCTAAGACTAGAAGGTTCAACTCGAGTTTCAGGATAAGTAGCTTTTAG 1194 0.3827 MLEVWLSLKKTLQCKPHPNQVHDPKTIRLQKGNQRTKSGNLESSNTKDFIQGSKRHLKNQPSFKGDIDITHPITHEIVLDRSNSKICRCCPCPQSSSDSKGSEGSHRTGRLATSSKITKSLDYNEASVSSNTRMLVQMDSDGFSTLTCHKCGEKLKNLDAVEAHHISEHSVTELEEDSSRQIIETICGTNSVNSENMLGKIDCILKVLNIPKTFACFEEYREMVKDKADKLQRKHPRCVVDGNELLRFHGTTIACSLGKNSSYSLCTLDYCGICQILRHGFSTNKEFRGALGVYTASTSGKAFDSISIMTSHERPFPRKSVIVCRVIAGRIYSPIEEIEEKVDSEFDSLAEKTSGYSDVEELYVLNPKALLPCFVVIFKQQTAKTRRFNSSFRISSF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02578 397 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 380 - -
Cca08g02578 397 Gene3D - 161 384 - -
Cca08g02578 397 MobiDBLite consensus disorder prediction 93 113 - -
Cca08g02578 397 ProSitePatterns Zinc finger C2H2 type domain signature. 148 169 IPR013087 -
Cca08g02578 397 SUPERFAMILY ADP-ribosylation 236 383 - -
Cca08g02578 397 MobiDBLite consensus disorder prediction 16 52 - -
Cca08g02578 397 MobiDBLite consensus disorder prediction 31 48 - -
Cca08g02578 397 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02578 Cca-Chr8 60168195 60170504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02578 4 379 C2H2 Transcription Factor Family AT5G54630 42.762 1.13e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca08g02578 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02578 - - gmx:100792577 639.032