Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02574 ATGGAGTATGAAGATGAAGATCGGTTATGTGTTACTATGGAAGAATTTTCTCTTGCTACTGAAAATGGTAGTAGCATGCAAAGGATGAGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTACAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTGAGTAGCAGGCTTTTGATGCTGCGTTCTATAATGAATAAAGCAACAATTGTCGAAGATGCTATCACCTACATTGAGAAGCTGCAAGCCAAAGTCCAGAGTCTCAGCCATGAGCTTCACCGAATGGAAGCAACTTCAGAGGACACAGCAGAGACAAAAGCAGATGAAATTAATGCAGTGGAGGATATGCAGAATTGGGGGATACAGGCAGAGGTGAGAGTGGCTCAAATAGATGGGAATAAACTTTGGGTAAAGATCATCATTGAGAAGAAGAGGGGAAGATTCAGCAAATTGATGGAGGCCCTCAATAATTTTGGCATTGAGCTCATAGATACTAATCTCACAACCACAAAAGGAGCATTTCTGATTACAAGCTGCATACAGGGCAAGGATGGTGAAAGACTTGCAGTTCATCAAACCAAGAATTTGTTACAAGATATTATCAATGACATATAG 624 0.4103 MEYEDEDRLCVTMEEFSLATENGSSMQRMSRKRNYDDDTREYKSKNLETERRRREKLSSRLLMLRSIMNKATIVEDAITYIEKLQAKVQSLSHELHRMEATSEDTAETKADEINAVEDMQNWGIQAEVRVAQIDGNKLWVKIIIEKKRGRFSKLMEALNNFGIELIDTNLTTTKGAFLITSCIQGKDGERLAVHQTKNLLQDIINDI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02574 207 MobiDBLite consensus disorder prediction 30 51 - -
Cca08g02574 207 Coils Coil 74 101 - -
Cca08g02574 207 MobiDBLite consensus disorder prediction 21 51 - -
Cca08g02574 207 SMART finulus 47 90 IPR011598 GO:0046983
Cca08g02574 207 PANTHER TRANSCRIPTION FACTOR DYT1 9 207 - -
Cca08g02574 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 100 IPR036638 GO:0046983
Cca08g02574 207 Gene3D - 38 110 IPR036638 GO:0046983
Cca08g02574 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02574 Cca-Chr8 60103215 60104366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02574 23 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 41.089 4.22e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02574 - - gmx:100793107 320.472