Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02571 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTTTGATGTCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAACTGATTTCGTGGATTTCAAGGGAACAACAAGGTCTTGTGCTGAGGAGACTAATTATAACTTGGTTTCTTCTGATGCTTCTATGAGTTTTCTCGATGCTGAGAAGCCACAGCAGAGTGATGACTCAGCGAGTGGAACTGGTAGCATCTTGATCGATTCCACCTTGCAAATGATGGGTTTTGGCATGTCGTCTTCGACTTCATCGAATTGGAATCAATCTCTATTAGGGAGCGCTTTTCATTCCGTGCTTCAAGAAGAAACAGGCATGGCTGGTGGTTCTGGTTCTTCCAATAACTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGGTGGTGGTGGTAGTCAAGTTTCTACCGTTAATGCTTTCAAGCCAATGAACCAAGATTTTTCCTTGGATCAGCAAGGTCTGAATTCTGTTGTTACCAGCACCGGATCATTATCTGGTGATTTCCCTATTGTTTCAGCTTCCTATGGTTACCCTTCAACGTTGATACAAAGCTTATATGAGCCTGAGCCTGAGCCTCAACCACAACCACAGAACTCACTTTTCACCAACCCCTCCATGTCCTATTCATCTACCGTAAACTACGGAACATGTTCCAATGAACTTTCACCAACATGGTCCAATGTTTCTTCCCTTCTCAAACCCTCAATGCCAAAGCAGCAACTTAGTGGATTGCACTTTTCCAATAATACTACTTTCTGGAGTGCTTCAGCCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCACAATATCAAACGCCAAAATTTGAGGAGAAACCCAACTGCCCCAATACTCTGTTAAATAAGCTCAAGAGAGAAGAATCTCCAGACACAGCATCAGCAGCGAAGAAAAATTCTTCGGAGCCAGCATTCAAGAGGCAAAGAATTGAGACTCCATCCCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTAGGAGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACTGCATCCGTTCTTCACGAAGCCATCGATTACATCAAGTTCCTTCATGACCAAGTCAGTGTATTGAGCAATCCATACATGAAAAATGGAGCTCCCATCCAACACCAGCAGGTACTTAATTATATCTGA 1281 0.4325 MAEEFQAAICGESWWNINPTRSVFPLMSSTCSVAAADAGNYSTWQTDFVDFKGTTRSCAEETNYNLVSSDASMSFLDAEKPQQSDDSASGTGSILIDSTLQMMGFGMSSSTSSNWNQSLLGSAFHSVLQEETGMAGGSGSSNNSQIQKDWSPKNFSSGGGGSQVSTVNAFKPMNQDFSLDQQGLNSVVTSTGSLSGDFPIVSASYGYPSTLIQSLYEPEPEPQPQPQNSLFTNPSMSYSSTVNYGTCSNELSPTWSNVSSLLKPSMPKQQLSGLHFSNNTTFWSASAEALNDIRAGVFASSQAQYQTPKFEEKPNCPNTLLNKLKREESPDTASAAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVSVLSNPYMKNGAPIQHQQVLNYI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02571 426 MobiDBLite consensus disorder prediction 133 163 - -
Cca08g02571 426 PANTHER TRANSCRIPTION FACTOR BHLH123 47 421 - -
Cca08g02571 426 Gene3D - 360 421 IPR036638 GO:0046983
Cca08g02571 426 CDD bHLH_AtbHLH_like 356 407 IPR045239 -
Cca08g02571 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Cca08g02571 426 MobiDBLite consensus disorder prediction 132 163 - -
Cca08g02571 426 MobiDBLite consensus disorder prediction 327 352 - -
Cca08g02571 426 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 421 - -
Cca08g02571 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 417 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02571 Cca-Chr8 60067597 60070668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02571 1 415 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 36.427 8.65e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02571 - - gmx:100794682 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01354 09 36637485 36641328 Cca08g02571 08 60067597 60070668 PCT