Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02568 ATGACTATGACATTGACAATCTCTTCCTACCTCTTTCTCTTCTCTCTTCTCCTTCTCTCCCTCCACAACCTCTTCTCTTCCGCAGCCACTTCCAGGCTCACCGCCGGCCAAATCATAAGGGACAAGGACCGCCAGACATTGGTCTCCGACGGTCTCAACTTCGCCATGGGTTTTTTCAGTCTCGACAACTCCTCTTCCCGCTACGTCGGAATCTGGTACTACAACATCCCCGGGCCAGCCCTCATATGGGTCGCTAACCGCAACAACCCCATCAACGGCACCGGAGGATCCATCACCATCGCAAACGACGGCAACCTCCTACTCCTCGACGGAGCCATGAAACCTGTCTGGTCCACCAACGTCTCCACCCACAGAAACTCCTCAGCACTGCTTCGTGACGACGGCAACCTCGTTCTCTCCAGTGAGAAAAAAGAGGTGTGGCAAAGCTTCGAGAATCCGACGGACACCTACGTGCCTGGTATGAAAGTTCCCGTGGGGGTTTCAAGTGTTAACCATGTCTTCACGTCGTGGAAATCAGCCACGGATCCTTCTGAGGGTAACTACACCATGGGGGTGGATCCTGAAGGGTTGGCTCAGATAGTGGTTTGGGAGGGGGAGAAAAGAAGGTGGAGAAGTGGGTATTGGGATGGTAGACTATTCCAAGGAGTGTCTATGACGGGAACGTATCTCTATGGTTTTACTCTTAACGGGGATGGGAAAGGTGGTAGGTACTTTATATATAACCCCTTAAACGGCACTGACAAGGTGCGTTTTCAGGTGGGGTGGGACGGTTTTGAAAGAGAGTTCAGGTGGAACGAGGATGAGAAACGTTGGACTGAGATTCAAAAAGGGCCTTTTCATGAGTGTGAGGTTTACAACAAGTGTGGGGCTTTTGCGGCGTGTGACGTGCCAACTTCTGGTGACCCTGTTTGTACTTGCATACGAGGTTTTCAGCCCAAGCATTGGGATGAGTGGGTGAAGGGGAATTGGTCGGGTGGGTGTACGAGGATGACTCCACTCAAGGCTCAGAGGAATGTCGCTTCTCGGGTTAGTGTTGGAGAGGATGGGTTCTTGCATCGTAGATCTATGAAGTTGCCTGATTTCGCACGTGTGCTTGGCACGGATGATTGTGAGAGAGAGTGTTTCAACAATGCTTCTTGTACTGCGTATGCAGATGTTCTTGGAATAGGGTGCATGGTATGGTATGGGGAGTTGGTTGATATTCAACATTTTGAAAGTGGAGGGAATACATTGCACATTCGCCTCGCTCATTCTGATTTAGATGATGGAGGAAAAAAGAACAGGGTTGCGATAATATCAGGTGTTGTGGCGGGGTTAATCTGCCTTGGAATCTTTGTATGGCTGGTGTGGAGATTCAAGGGAAAACTTAAAGTTCTGCCTACAGTTTCCTCAGCCTCGTGTTGCAAGAGTAGTGATGTACTACCAGTTTTTGATGCAAGCAAGAGCAGAGACATGTCAGCAGAATTTTCAGTATCGGCTGACCTTAGTTTGGAGGGGAGCCAAGTAAGCAGGCCAGATTTTCCACTTTTCAATTTCAGTTGCATTTCAATAGCCACAAACAATTTCTCAGAAGAAAATAAGCTTGGACAAGGGGGCTTTGGTCCTGTCTACAAGGGAAAGCTTCCAGGTGGAGAACAAatagctgttaagaggctttcaagacggtctggccaaggtttagaggagttcaagaatgaaatgatgctgatagccaaactacaacaccgaaatcttgttagactcatgggttgttctattcaaggggaagagaagttgctggtatatgagtacatgccaaacAAAAGCTTGGATTGCTTTTTATTTGACCCAGTCAAACAAAAACAACTAGATTGGACAAGACGCTTTGAGATCATTGAAGGCATCGCAAGAGGATTACTTTATTTGCACCGGGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAACAAGTAATATTTTGTTAGATGAAAATATGAATCCAAAAATTTCAGACTTTGGCTTGGCGAAAATATTTGGTGGGAATCAAAATGAAGGGAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCGCCTGAATATGCAATGGAAGGTCTGTTCTCAGTCAAATCTGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACTAGCTTTCGTCATTCAGATGACTCAAGTCTCATAGGATATGCGTGGCATCTTTGGAATGAACACAGAGAAATAGAGCTTGTTGATCCTTGCATTCGTGATTCGAGTCCTAAAAACAAAGCTATGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCTGCTGTGGTGTTGATGCTGGAAAGTGAAGCTACGACTCTTCCCATGCCTACGCAACCTCTGATTACTTCCATGAGGAGATCTGATGACAGAGAATTTTACATGGATGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2535 0.4304 MTMTLTISSYLFLFSLLLLSLHNLFSSAATSRLTAGQIIRDKDRQTLVSDGLNFAMGFFSLDNSSSRYVGIWYYNIPGPALIWVANRNNPINGTGGSITIANDGNLLLLDGAMKPVWSTNVSTHRNSSALLRDDGNLVLSSEKKEVWQSFENPTDTYVPGMKVPVGVSSVNHVFTSWKSATDPSEGNYTMGVDPEGLAQIVVWEGEKRRWRSGYWDGRLFQGVSMTGTYLYGFTLNGDGKGGRYFIYNPLNGTDKVRFQVGWDGFEREFRWNEDEKRWTEIQKGPFHECEVYNKCGAFAACDVPTSGDPVCTCIRGFQPKHWDEWVKGNWSGGCTRMTPLKAQRNVASRVSVGEDGFLHRRSMKLPDFARVLGTDDCERECFNNASCTAYADVLGIGCMVWYGELVDIQHFESGGNTLHIRLAHSDLDDGGKKNRVAIISGVVAGLICLGIFVWLVWRFKGKLKVLPTVSSASCCKSSDVLPVFDASKSRDMSAEFSVSADLSLEGSQVSRPDFPLFNFSCISIATNNFSEENKLGQGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPVKQKQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDENMNPKISDFGLAKIFGGNQNEGNTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEHREIELVDPCIRDSSPKNKAMRCIQIGMLCVQDSAAHRPNMSAVVLMLESEATTLPMPTQPLITSMRRSDDREFYMDGLDVSNDLTVTMVVGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02568 844 Gene3D Phosphorylase Kinase; domain 1 493 604 - -
Cca08g02568 844 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Cca08g02568 844 Gene3D - 24 150 IPR036426 -
Cca08g02568 844 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Cca08g02568 844 SMART ntp_6 352 422 IPR003609 -
Cca08g02568 844 Gene3D Transferase(Phosphotransferase) domain 1 605 808 - -
Cca08g02568 844 CDD B_lectin 45 153 IPR001480 -
Cca08g02568 844 ProSiteProfiles Protein kinase domain profile. 529 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02568 844 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 11 844 - -
Cca08g02568 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 11 844 - -
Cca08g02568 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 217 IPR036426 -
Cca08g02568 844 CDD PAN_AP_plant 354 423 - -
Cca08g02568 844 Pfam D-mannose binding lectin 81 178 IPR001480 -
Cca08g02568 844 SMART serkin_6 529 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02568 844 CDD STKc_IRAK 535 800 - -
Cca08g02568 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Cca08g02568 844 ProSiteProfiles PAN/Apple domain profile. 352 423 IPR003609 -
Cca08g02568 844 Pfam Protein tyrosine and serine/threonine kinase 532 797 IPR001245 GO:0004672|GO:0006468
Cca08g02568 844 Pfam PAN-like domain 353 408 IPR003609 -
Cca08g02568 844 SMART blect_4 36 153 IPR001480 -
Cca08g02568 844 PIRSF SRK 1 844 IPR024171 GO:0004674
Cca08g02568 844 SUPERFAMILY Protein kinase-like (PK-like) 514 828 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02568 Cca-Chr8 60035923 60040054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02568 477 812 Receptor kinase-like Gene Family AT4G23230 58.160 6.49e-131 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02568 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02568 - - gmx:102660295 1469.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01346 09 36492626 36496521 Cca08g02568 08 60035923 60040054 PCT