Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02567 ATGCATCGATATATTGGATTATTGTGCGTGCAAGAGGTTGCACAAGATAGGTATAGTGTGGCCACTGCAATCTTGATACTGAATAGTGACATTGTCACTCTCCCTCCTCCAAAGGAAACAACCTACATTATTCGTCCATTGCCAGAAAGCATCAAGTGCAGgtctctggttgagaattgcgccgggcgcgcacttaacgcgccgggcTCTAAGAGGCTTTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAACACCGAAATCTTGTTAGACTCATGGGTTGTTCTATTCAAGGGGAAGAGAAGTTGCTGGTATATGAGTACATGCCAAACAAAAGCTTGGATTGCTTTTTATTTGACCCAGTCAAACAAAAACAACTAGATTGGACAAGACGCTTTGAGATCATTGAAGGCATCGCAAGAGGATTACTTTATTTGCACCGGGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAACAAGTAATATTTTGTTAGATGAAAATATGAATCCAAAAATTTCAGACTTTGGCTTGGCGAAAATATTTGGTGGGAATCAAAATGAAGGGAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCGCCTGAATATGCAATGGAAGGTCTGTTCTCAGTCAAATCTGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACTAGCTTTCGTCATTCAGATGACTCAAGTCTCATAGGATATGCGTGGCATCTTTGGAATGAACACAGAGAAATAGAGCTTGTTGATCCTTGCATTCGTGATTCGAGTCCTAAAAACAAAGCTATGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCTGCTGTGGTGTTGATGCTGGAAAGTGAAGCTACGACTCTTCCCATGCCTACGCAACCTCTGATTACTTCCATGAGGAGATCTGATGACAGAGAATTTTACATGGATGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 1077 0.3807 MHRYIGLLCVQEVAQDRYSVATAILILNSDIVTLPPPKETTYIIRPLPESIKCRSLVENCAGRALNAPGSKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPVKQKQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDENMNPKISDFGLAKIFGGNQNEGNTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEHREIELVDPCIRDSSPKNKAMRCIQIGMLCVQDSAAHRPNMSAVVLMLESEATTLPMPTQPLITSMRRSDDREFYMDGLDVSNDLTVTMVVGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02567 358 Gene3D Transferase(Phosphotransferase) domain 1 119 323 - -
Cca08g02567 358 Pfam Protein tyrosine and serine/threonine kinase 79 311 IPR001245 GO:0004672|GO:0006468
Cca08g02567 358 ProSiteProfiles Protein kinase domain profile. 1 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02567 358 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 71 358 - -
Cca08g02567 358 SUPERFAMILY Protein kinase-like (PK-like) 71 342 IPR011009 -
Cca08g02567 358 Gene3D Phosphorylase Kinase; domain 1 70 118 - -
Cca08g02567 358 SMART serkin_6 51 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02567 358 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 71 358 - -
Cca08g02567 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02567 Cca-Chr8 60025119 60028877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02567 71 326 Receptor kinase-like Gene Family AT4G23230 64.202 3.71e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02567 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02567 - - gmx:102660295 553.903