Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02566 ATGATAGTGGATTTCACAAGTCTGATTCTTGCTCTCATCATACTTTGCTGCTTTGCTCAGTACTGCAGTTCATCCAACGATACCATCACAGCAGACCAATTCATCAGAGACCCTCACACTCTGACCTCAGCTAACAGTTTCTTCAAGTTAGGATTCTTCAGCCCTCAAAATTCGTCAAATCGCTACGTGGGAATCTGGTATCTCTCGGAGTCTAATATCATATGGGTAGCTAACAGAAACCACCCACTAACGAACAACTCTTCCGGGGTTGTTCAAATTTCTACAGATGGCAATCTTTTGGTATTAGATCATAGCAAGAAAAGGGTTATTTGGTCATCAAATTTGACACATGTTGCAACCAATTCAAGTGCCAAACTTTTTGACACAGGAAATCTGATCCTGTTAGATGGTGCCTCGGGACGAAGTAGTTGGGAGAGTTTCCAACATCCTTGTCATGCCTTCGTGCCAAAGATGAAACTTAGTACTACTAACCCAAAAACAGGTGAGAAAGTACGCATAACATCGTGGAAAACTCCCTCTGATCCTTCTATTGGATACTATTCTGCTACTCTTGAACACCCCAACATGCCTGAACTGTTTTACTGGTTTAATAAAACGCGACCGTATCATCGGACCGGTCCATGGGATGGTCAGAGTTTCATTGGCTCGCCTAGGTTGTTTCCTGGTTATGCATATAGATGGAGTATAATGACTGAAGCTGACGAAACCGTTTATCTTTCTTTTGATTTCCGAAGTGAACCTTACTTTGTAATCGCGAGCTTGAATCCACAGGGCGATCTTGCTATCGCATTGTGGATCCATGAAAAGTTAGTGGGGAGGGTGCTGTTGGAACGAACCTCGtgcgatctttatggctactgtggggcatttggaagctgcaataagcagagttctccaacatgcacctgcttgagtggttataagcccaaaaatgtagaggagtggaatacaaaaaattggactagtgggtgtgtaaggagTGAGCCACTGCACTGTGGGGGACACACAAATGGGAGTGAAATTAGCAATGACGACGGGTTTTTGAAACTTGAGAATGTGAAAGTGCCAGATTTCGTACATAGATCAACTTCTTTGGGAGATGAGTGCAGAGAAGAATGTTTGAGGAATTGTTCTTGCGTGGCCTACGCATATGACAGTGGTGGCATTGGATGCATGGTTTGGAGTGGGGACTTGATCGACATACAAAAATTCTCAAGCGGAGGGGTTGATCTTTACATTCGTGTGCCACCTTCGGAACTTGAAAAACATTCCGGTAAAAGAAGACACAGGATAGTAATGATTCCAGCTGTAGTAACTGTAGGAATGATTGCCTTGGCTGTCTGTGTTTATCTCTCATGGAAATGGATTGCTAAACCAGCAGGAAAAATATATTTACAAAGACAGAGAACGAATGAAGATCAAGAACAAGTTAAATTGAATGATCCGTTGCCACTTTTTAATTTCGAAGAACTTGTAAATGCTACAAACAATTTTGACTCAGCCAACGCGCTTGGCAAAGGAGGTTTTGGTACAGTATATAAGGGACAATTGAAAGGTGGACAGGAAATAGCAGTGAAAAGACTTTCAAAAAAATCTGGCCAGGGGTTAGAAGAATGTATGAATGAGGTATTAGTGATTTCAAAGCTTCAACATCGAAATCTTGTCAGACTTCTCGGTTGTTGTATTGAACAGGAGGAAAATATGTTGGTATACGAGTACATGCCTAACAAGAGTTTGGACGCAATATTGTTTGATCCAGTAAAAAAGAAGAATCTAGATTGGCCAAAACGTTTTAAAATAATTGAAGGAATTTCTAGAGGTTTGCTTTATCTTCACAGAGATTCAAGATTAAAAATTATACACAGAGATTTAAAGGTTAGTAACATCTTGTTAGATGAAGAGTTCAATCCAAAAATATCAGATTTTGGCATGGCCAGAATCTTTGGAGGCAATGATATACAAGCAAATACCGAAAGGGTTGTTGGAACATTTGGTTATATGCCTCCAGAATATGCATTTCAAGGATTGGTTTCTGAGAAATTGGATGTCTTTAGCTTTGGAGTGTTATTGTTAGAGATTATTAGTGGGAGAAAAATCACCGGGTATTACGATCATGACCAACCATTGAGTCTCTTAGGACTTGCTTGGAAATTATGGAATGAAAAGGACATCCAATCCCTGATAGACCTTGAAATATCTAATCTAAATAATGTGAATGACATTGTGAGATGCATACACATCGGGCTTCTTTGTTCGCAAGAACTTGCAAAAGAAAGACCAATTATGGCTACAGTAATTTCAATGCTTAATAGTGAATTTGTCAATCTTCCTCCCCCATCAAATCCTGCATTCCTCGAAAGGCAAATTGTATCATGTTCAGATTCATCTCAGCAAAACTACATCACATACTCCGTCAACAATGTTACTGTCACAAACATACATGGTAGATAG 2472 0.3766 MIVDFTSLILALIILCCFAQYCSSSNDTITADQFIRDPHTLTSANSFFKLGFFSPQNSSNRYVGIWYLSESNIIWVANRNHPLTNNSSGVVQISTDGNLLVLDHSKKRVIWSSNLTHVATNSSAKLFDTGNLILLDGASGRSSWESFQHPCHAFVPKMKLSTTNPKTGEKVRITSWKTPSDPSIGYYSATLEHPNMPELFYWFNKTRPYHRTGPWDGQSFIGSPRLFPGYAYRWSIMTEADETVYLSFDFRSEPYFVIASLNPQGDLAIALWIHEKLVGRVLLERTSCDLYGYCGAFGSCNKQSSPTCTCLSGYKPKNVEEWNTKNWTSGCVRSEPLHCGGHTNGSEISNDDGFLKLENVKVPDFVHRSTSLGDECREECLRNCSCVAYAYDSGGIGCMVWSGDLIDIQKFSSGGVDLYIRVPPSELEKHSGKRRHRIVMIPAVVTVGMIALAVCVYLSWKWIAKPAGKIYLQRQRTNEDQEQVKLNDPLPLFNFEELVNATNNFDSANALGKGGFGTVYKGQLKGGQEIAVKRLSKKSGQGLEECMNEVLVISKLQHRNLVRLLGCCIEQEENMLVYEYMPNKSLDAILFDPVKKKNLDWPKRFKIIEGISRGLLYLHRDSRLKIIHRDLKVSNILLDEEFNPKISDFGMARIFGGNDIQANTERVVGTFGYMPPEYAFQGLVSEKLDVFSFGVLLLEIISGRKITGYYDHDQPLSLLGLAWKLWNEKDIQSLIDLEISNLNNVNDIVRCIHIGLLCSQELAKERPIMATVISMLNSEFVNLPPPSNPAFLERQIVSCSDSSQQNYITYSVNNVTVTNIHGR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02566 823 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 821 - -
Cca08g02566 823 SMART blect_4 32 150 IPR001480 -
Cca08g02566 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Cca08g02566 823 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Cca08g02566 823 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Cca08g02566 823 ProSiteProfiles Protein kinase domain profile. 505 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02566 823 Pfam Protein tyrosine and serine/threonine kinase 509 705 IPR001245 GO:0004672|GO:0006468
Cca08g02566 823 CDD STKc_IRAK 511 777 - -
Cca08g02566 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 217 IPR036426 -
Cca08g02566 823 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Cca08g02566 823 Pfam Domain of unknown function (DUF3403) 778 823 IPR021820 GO:0004674
Cca08g02566 823 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Cca08g02566 823 SUPERFAMILY Protein kinase-like (PK-like) 488 811 IPR011009 -
Cca08g02566 823 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Cca08g02566 823 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 20 821 - -
Cca08g02566 823 CDD PAN_AP_plant 336 423 - -
Cca08g02566 823 SMART serkin_6 505 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02566 823 CDD B_lectin 32 150 IPR001480 -
Cca08g02566 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Cca08g02566 823 Pfam D-mannose binding lectin 73 177 IPR001480 -
Cca08g02566 823 Pfam PAN-like domain 349 408 IPR003609 -
Cca08g02566 823 Gene3D - 20 148 IPR036426 -
Cca08g02566 823 SUPERFAMILY Hairpin loop containing domain-like 352 419 - -
Cca08g02566 823 Gene3D Phosphorylase Kinase; domain 1 467 580 - -
Cca08g02566 823 SMART ntp_6 349 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02566 Cca-Chr8 60020584 60024119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02566 420 823 Receptor kinase-like Gene Family AT4G05200 46.394 6.70e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02566 PK_Tyr_Ser-Thr 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02566 - - gmx:106794168 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02566 08 60020584 60024119 Cca09g01346 09 36492626 36496521 PCT