Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02564 ATGGGATTCCGAAGTCACACATGTTTGCTAAATGCTTTGCTCGTCATTTTCCTGGGTTTGACCTCAGCCAGGGACACCCTCACATCTTCTCAATCCATCACAGACTCACAGACACTAACCTCAAACGACACCATCTTCAAACTCGGTTTCTTCAGCCCCCAGAATTCAACGCACCGCTACTTAGGAATCTGGTACCTCTCTGACTCCAACGTTGTATGGATAGCCAACAGAGATCAACCACTTGTAGATTCTTCCGGGGTTTTCAAAATCTCCAAAGACGGTAACCTCGTACTAGTTGATGCAAAAAACAAGGTTTTTTGGTCCTCAAACGTGTCCAACACTGCAACAACAACCACTTCAACTGTTCAACTCCAACGTTCAGGGAATCTAGTGCTGAAAGATGACTCCACGGGACAAAACTTATGGGAGAGTTTCAAGCATCCTTGTGATGCAGCAGTGCCAACCATGAGGATCAGTGCTAACAGAATCACGGGTGAGAAAATACGTTTTGTGTCTAGGAAAACCGCTTCGGATCCTTCTAGTGGATACTTCTCTGCTTCACTTGAACGTTTGGATGCCCCAGAGGTGTTTTTTTGGGTTAATGGGACTCATCCTTATTGGAGAACTGGTCCTTGGAATGGTAGGATCTTCATTGGCACACCCCTGATGTCAACAGGGTATTTGTATGGATGGAATGTGGGGTATGAAGGGAAAGAAACTGTTTATCTAACTTATAGTTTTGCTGATCCTTCTGCGTTTGGAATCCTCACCTTGACTCCACAAGGAAAGCTTAAATTGGTGAGGTATTATAACAATAAGCAAGTGTTGACTATGGATTTGGGAATTTCTGATTGTGATGTTTATGGCACGTGTGGGGCGTTTGGAACCTGTAATACTGAGAGCTCACCTATATGTAGTTGTTTGAATGGATATGAGCCCAGGAATGAAGAGGAGTGGAGTAGGCGAAATTGGACTAGTGGGTGTGTGAGGAAGGTGGCACTCAAGTGTGAGAGGTTGCGAAATGGGAGTGAAAGTGAAGGTGGACAGGAAGATAAATTTTTGAAACTTGGAACTATGAAAGTTCCAGATTTTGCACATAGGTTGGATGTTGAGGAAGGGCAATGTGGAACACAGTGCTTGCAGAATTGCTCTTGTTTGGCGTATGCATATGATGCTGGCATTGGCTGCTTGTATTGGAGTGAAGACTTAATTGACTTGCAAAAGTTTTCAACTGCAGGAGTTGATCTCTACATCCGTCTTGCCCATTCAGAATTTCAAGCCAGTACTGCACAAGGGCATACTAATAAAAGAGGCAAAAGGTTAATCATTGGAATTGCTGTGGCAACTGCTGGAACAATTATCTTGGTCATCTGTGCTTATCTAGCCATTCGCACTTTTCACTTGGGGAAGGGCACTGCTAAACATTCGGATAATCAAAGAGTGAGTGACGTCCAGAAACCAGTTAAACTGGATGAGCTACCACTATTTGATTTTGAAGTCGTTGCTAATGCTACAAACGACTTTCACTTGGGTAATACGCTTGGAAAGGGAGGTTTTGGTCCGGTGTACAAGGGACTATTGCCAGATGGTCAAGAAattgcggtgaaaagactctccagagcatctgggcaaggtgtagaagaatttatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgtaaaacttcttggctgctgtattgaaggagatgagaaaatgctcatctatgagttcatgccaaaTAAAAGTTTGGATGCATTCATCTTTGATCCACTCCGGCGGAATCTTCTAGACTGGACAAAGCGTTTTAATATAATTGAAGGAGTTGCAAGGGGCTTACTCTATCTTCAtagagattctagattaaaaattatacatagagattTGAAGGCAAGTAATATCTTGTTAGATGTAGAGATGAATCCAAAAATATCAGACTTTGGTTTAGCTAGAATATATAAAGGAGAAGATGAAGTTAATACCAAAAGGGTTGTTGGCACATATGGGTACATGTCCCCTGAATATGCGATGGAAGGATTGTTTTCAGAGAAATCAGATGTATATAGTTTTGGAGTTTTGCTGTTGGAGATTATTAGTGGAAAAAGAAACACTAGCTTCCGTAATGATGACCAGTCTCTCAGCCTCATAGGATATGCATGGAATCTATGGAACGAAGACAATATTAAGTCCTTGGTTGATCCAGAGATATCAGGTTCAGGCTCTGAGGATCATATTTTGAGGTGCATCCATATAGCATTTCTATGCGTGCAAGAAGTTGCAAAAACAAGACCAACTATGACTGCTGTACTGTCGATGCTTAATAGTGAGATTTCTCATCTCCCTCCTCCTAGGCAAGTTGGATTTGTTCAGAAGCACAATTCATCAAGTCTAGAGTCTTCTTCTCAGGAAAATCAGTGTAACTCCAACAACCATGTAACTCTTACTGAGATCCAAGGCAGATAA 2478 0.3902 MGFRSHTCLLNALLVIFLGLTSARDTLTSSQSITDSQTLTSNDTIFKLGFFSPQNSTHRYLGIWYLSDSNVVWIANRDQPLVDSSGVFKISKDGNLVLVDAKNKVFWSSNVSNTATTTTSTVQLQRSGNLVLKDDSTGQNLWESFKHPCDAAVPTMRISANRITGEKIRFVSRKTASDPSSGYFSASLERLDAPEVFFWVNGTHPYWRTGPWNGRIFIGTPLMSTGYLYGWNVGYEGKETVYLTYSFADPSAFGILTLTPQGKLKLVRYYNNKQVLTMDLGISDCDVYGTCGAFGTCNTESSPICSCLNGYEPRNEEEWSRRNWTSGCVRKVALKCERLRNGSESEGGQEDKFLKLGTMKVPDFAHRLDVEEGQCGTQCLQNCSCLAYAYDAGIGCLYWSEDLIDLQKFSTAGVDLYIRLAHSEFQASTAQGHTNKRGKRLIIGIAVATAGTIILVICAYLAIRTFHLGKGTAKHSDNQRVSDVQKPVKLDELPLFDFEVVANATNDFHLGNTLGKGGFGPVYKGLLPDGQEIAVKRLSRASGQGVEEFMNEVVVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFIFDPLRRNLLDWTKRFNIIEGVARGLLYLHRDSRLKIIHRDLKASNILLDVEMNPKISDFGLARIYKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIISGKRNTSFRNDDQSLSLIGYAWNLWNEDNIKSLVDPEISGSGSEDHILRCIHIAFLCVQEVAKTRPTMTAVLSMLNSEISHLPPPRQVGFVQKHNSSSLESSSQENQCNSNNHVTLTEIQGR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02564 825 CDD STKc_IRAK 514 779 - -
Cca08g02564 825 ProSiteProfiles Protein kinase domain profile. 508 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02564 825 Pfam D-mannose binding lectin 71 174 IPR001480 -
Cca08g02564 825 SMART blect_4 30 148 IPR001480 -
Cca08g02564 825 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Cca08g02564 825 CDD B_lectin 30 148 IPR001480 -
Cca08g02564 825 Gene3D Transferase(Phosphotransferase) domain 1 584 785 - -
Cca08g02564 825 Pfam Protein tyrosine and serine/threonine kinase 509 776 IPR001245 GO:0004672|GO:0006468
Cca08g02564 825 PIRSF SRK 2 825 IPR024171 GO:0004674
Cca08g02564 825 CDD PAN_AP_plant 345 421 - -
Cca08g02564 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 16 824 - -
Cca08g02564 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 214 IPR036426 -
Cca08g02564 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 824 - -
Cca08g02564 825 SMART ntp_6 348 420 IPR003609 -
Cca08g02564 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Cca08g02564 825 Pfam PAN-like domain 349 406 IPR003609 -
Cca08g02564 825 SUPERFAMILY Protein kinase-like (PK-like) 493 809 IPR011009 -
Cca08g02564 825 MobiDBLite consensus disorder prediction 795 825 - -
Cca08g02564 825 Pfam S-locus glycoprotein domain 207 314 IPR000858 GO:0048544
Cca08g02564 825 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Cca08g02564 825 ProSiteProfiles PAN/Apple domain profile. 336 421 IPR003609 -
Cca08g02564 825 Gene3D - 20 146 IPR036426 -
Cca08g02564 825 SMART serkin_6 508 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02564 Cca-Chr8 60012536 60016215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02564 496 793 Receptor kinase-like Gene Family AT4G11530 60.333 1.95e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02564 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02564 - - gmx:112998788 1427.92