Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02560 ATGAAGAAGTGCGAGCTTTGCAACAAGCCCGCAAAATTGTTCTGTGAATCAGATCAAGCGAGCCTCTGTTGGGAATGCGATGCTAAGGTTCACAGTGCAAACTTCCTCGTAACCAAGCATCCTAGGATTCTCCTCTGCCATGTTTGTCAATCACTAACAGCTTGGCACGGAACTGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACTTGTACCTGCAGCCAACAGAATCACGATCATGATGATGGCACAGAGGAGGATCACGTGGAAAACCATGATGGTGGTGTGACTCAAGATGATGAAGAAAATCAAGTGGTTCCGGGGACATCTACACCACCACCCCCTGCTTCCACTTCTTCAAGTGTTGCAACTAGTTCTACCAGGTAA 390 0.4795 MKKCELCNKPAKLFCESDQASLCWECDAKVHSANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTISVCNTCTCSQQNHDHDDGTEEDHVENHDGGVTQDDEENQVVPGTSTPPPPASTSSSVATSSTR 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02560 129 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 123 - -
Cca08g02560 129 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Cca08g02560 129 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 123 - -
Cca08g02560 129 MobiDBLite consensus disorder prediction 79 100 - -
Cca08g02560 129 CDD Bbox1_BBX-like 3 45 - -
Cca08g02560 129 SUPERFAMILY B-box zinc-binding domain 2 32 - -
Cca08g02560 129 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cca08g02560 129 Gene3D Classic Zinc Finger 1 35 - -
Cca08g02560 129 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Cca08g02560 129 MobiDBLite consensus disorder prediction 78 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02560 Cca-Chr8 59980838 59982013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02560 2 73 C2C2-CO-like Transcription Factor Family AT4G27310 65.278 2.23e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca08g02560 zf-B_box 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02560 - - ccaj:109788364 237.654