Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02557 ATGGAGTTTGATCTTGAAGATCCACTAGTCAACTTGGAAGAAGAGCAAACCTTTACTATATCAAAACTCTTTGCCTCTGAATCTGATCACATGCCCTCCCCAAACTGCTTAAGCTCAACACATTTTCACGTTTCCTTCCGTTCTGAAGCCATATCTCTTATACTTCAGGTTCAGTTTTCTTGCAATTTGGACCTAATTGTAGCTTACCTTGCTATAAATTACTTGCACCGTTTCGTATCAAGCCAAGAAATTCCGCCGGGGAAGCCGTGGTTTCTCAGGCTTCTTGTCATATCATGTCTTTCTCTTGCTTCCAAGATGAAGAACACAACTATATCATTTTTGGATACGCAGAAAGAAGGTTGCAACTTTAAGGTTCAAAATATTCAGAAAATGGAGCTTCTTATTCTGGGGGCTCTGAAATGGCGTGTGAGGTCAATTACACCTTtttctttccttcatttctttctttctttAGCCGAAATTAAAGACCAAACACTGAAGCAAGCACTTAAAGAAAGAGCTTCAGAGATAATCTTCAATGCTCAAAATGACATTAAGTTCTTAGAGTATAAACCTTCAACTATTGCAGCAACTGCCCTTATCTTTGCATCTCATGAACTATTTCCGAAGCAATATTCTATTCTGAGAGCTTCAATTACAGCCTGTGAGTATTTAGATGAGGAGATGTTGCCCAAGTGCTTTGATTTGATGCAAGGGATGTTGAGAATGGAAGCAAAGAAGTTAATGATGGATACAAGATTTTTAAGCACTGTAACTCCAGTGAGTGTGCTGGAGAGAAACACCAAACGACAAAGAATTTGA 822 0.3783 MEFDLEDPLVNLEEEQTFTISKLFASESDHMPSPNCLSSTHFHVSFRSEAISLILQVQFSCNLDLIVAYLAINYLHRFVSSQEIPPGKPWFLRLLVISCLSLASKMKNTTISFLDTQKEGCNFKVQNIQKMELLILGALKWRVRSITPFSFLHFFLSLAEIKDQTLKQALKERASEIIFNAQNDIKFLEYKPSTIAATALIFASHELFPKQYSILRASITACEYLDEEMLPKCFDLMQGMLRMEAKKLMMDTRFLSTVTPVSVLERNTKRQRI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02557 273 SUPERFAMILY Cyclin-like 18 143 IPR036915 -
Cca08g02557 273 SMART cyclin_7 52 137 IPR013763 -
Cca08g02557 273 Gene3D - 22 234 - -
Cca08g02557 273 Gene3D - 33 144 - -
Cca08g02557 273 Pfam Cyclin, N-terminal domain 22 143 IPR006671 -
Cca08g02557 273 SUPERFAMILY Cyclin-like 128 258 IPR036915 -
Cca08g02557 273 PANTHER CYCLINS 5 271 IPR039361 -
Cca08g02557 273 CDD CYCLIN 47 136 IPR013763 -
Cca08g02557 273 Pfam Cyclin, C-terminal domain 146 242 IPR004367 -
Cca08g02557 273 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 271 - -
Cca08g02557 273 SMART Cyclin_C_2 146 261 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02557 Cca-Chr8 59964811 59966726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02557 1 266 Core Cell Cycle Gene Families AT4G03270 41.786 1.75e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02557 K18812 - gmx:100799763 456.832