Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02556 ATGAGCAACACAACGACGATGGCACCGTTTGATCTCTCAAATAGATCCATCATTTGCTACACGCCAACCATGACAACAACCAATGGCCTATGGCAGGGAGATAACCCTTTTGATTACTCCCTTCCTCTCTTTATCTTTCAATTAACGTTGGTGGTATTTGCCACACGTTTCTTTGTTTTCATCCTCAAGCCGTTTCGCCAACCGCGTGTCATTGCTGAAATCATGGGTGGATTGTTATTGGGTCCATCAGTGTTTGGTAGAAATGAAAGATTTGCCAATGCTATATTCCCTTTGAAAAGTGTGATGGTGATGGAGACAATGGCAAACATGGGTCTCATATACTTCCTCTTTCTGGTTGGGTTAGAAATGGACATTTCGATTATCAAACGCGCAGGAAAAAAGACACTGTCCATAGCCATTGCTGGAATGATATTGCCCTTTTTGGTTGGTATTGGTCTCTCATCTTTAATATTAGTGGACGACAAAAGCATGAGCCACCCCGGCTATGTCCTCTATCTTGCAACTGTTCTATCTGCCACTGCATTCCCGGTGCTTGCTAGAATGCTTGTTGTGCTAAAACTCATCAACACAGACTTGGGGAAGCTTGCTCTCTCAACTTCTCTCGTCAATGATGTGTGTACATGGATGTTGCTTGCTCTAGCTATAGCTTTATCAGAGCAAAACACTAGCAATTGGGCCTCTATTTGGGTTGTGTTATCAAACCTTGCTTTTGTTTCTTTCTGCCTTATTGTTGTTAGGCCAGCGGTCACATGGTTGATCAAGAGAACCCCAGAAGGAAAACCTTTCACTGAGTTCCAAATATGCATAGTGCTCACTGGTGTTATGATCTCAGCCTTTATTACAGATGTTCTTGGAACGCATTCTGTTTTTGGAGCTTTTGTGTATGGCCTAGTGATTCCAAATGGCCCACTTGGAGCTGCTATAATAGAAAAGCTAGAAGACTTTGTTTCCGGGCTTTTGCTTCCTCTCTTTTATGCCCTCATTGGGCTTAAGACTGATATCAGCTTGATCAGTGGAGCTAGTTCATGGGCATTTCTATTCGTGGTGATTCCCCTCTCTTGTGTAGGCAAGATTGTTGGGACTATGCTTATGACACTTGTGTTCCAGATACCAAACCGTGATGGGGTTGTTCTTGGTTTGCTTATGAACACTAAAGGCCTTGTTGAAATGATTGTGCTCAATGTTGGGAGGGAACAAAAGGTCTTGGGTAATCAAATTTTCTCACTCATGATTATTGCAACACTCGTAATGACAGCAATCATTTCTCCCATTGTATCATTAATTTATAAGCCAAGAAAAAGGCTTGCACCTTATAAAAGGAGAACAATGCAGAATACAAGACTTGATTCAGAGTTAAGGGTCCTGGTGTGCATTCACACCCCTAGAAACGTCCCCACAATGGTCAATCTCCTTGAAGCAACTCACCCCCACAAAAGGTCTCCCATATGTGCTTATGTGCTCCACTTGGTTGAACTCACTGGTAGAGCTTCTGCCATGCTCATTGTCCATGCCAATAGACAATCAGGAGGTCCAGCCTTGAACAAAACACAAGCGCAAACCGACCACATCATCACTGCCTTTCAGAACTTTGAGGAACACGTTGGTCATGTCCAAGTCCAACCCTTGACAGCTATCTCCTCATACTCCACCATGCATGAAGACATATGCAACTTGGCCGAGGAGAAAAGGGTATCCATGGTCATCATTCCTTTCCACAAGCAACAAACAGTTGATGGAGAAATGGAAGACACTATTCCACAATTCAGAATGGTGAACCACAACTTATTACAAAGCTCACCTTGCTCCCTTGGCATACTTGTGGATAGAGGCCTCAACGGATCCAACCGCTTGATAGGAAACCAGGCATCTCATGAAGTGGTTGTGTTATACTTTGGAGGACCAGATGATAGAGAGGCATTAGCCTATGGATGGAGAATGTCAAGGCATCCAAGAGTTAAGCTCATCGTCATGCATTTCATTCAAAGGAAGGAAACAACAACTCAAACTCCTCAAGAAGATTTGTTATTTACTAACTTGGATCAAAGTTTCACGAATGGGAGGGAGGAGAAACTGGATGAGGAGTACATAAATGAGTTCAAGTGGGTGATTGCAAATGATGACTCAGTTGTTTACGTAGACAAGTATGTGAGTAATGGAGAGGAAACAGTTGCAGCAATAAGATCAATGACCCATGCAAATGACTTGTTCATAGTAGGGAGGGGTCAAGGGATAATGTCACCACTAACAGATGGTTTAACAGATTGGAGTGAGTGTCCGGAGTTGGGAGCCATAGGGGACTTGCTAGCTTCTTCAGACTTTGAAACAACAGCTTCAGTGTTGGTGATGCATCAACATGTGGGGCAAGATCAAGATGGGGAGGAAATTTTTGTGATTGAGAGACCGTGGCAAACCAGTGAAAGCTACCAGCACATGAAACAACAGCAACACATGCAAAGATACACAATGCCAGTGGGAATGGGACACTCTCTTTTATAA 2517 0.4331 MSNTTTMAPFDLSNRSIICYTPTMTTTNGLWQGDNPFDYSLPLFIFQLTLVVFATRFFVFILKPFRQPRVIAEIMGGLLLGPSVFGRNERFANAIFPLKSVMVMETMANMGLIYFLFLVGLEMDISIIKRAGKKTLSIAIAGMILPFLVGIGLSSLILVDDKSMSHPGYVLYLATVLSATAFPVLARMLVVLKLINTDLGKLALSTSLVNDVCTWMLLALAIALSEQNTSNWASIWVVLSNLAFVSFCLIVVRPAVTWLIKRTPEGKPFTEFQICIVLTGVMISAFITDVLGTHSVFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLLPLFYALIGLKTDISLISGASSWAFLFVVIPLSCVGKIVGTMLMTLVFQIPNRDGVVLGLLMNTKGLVEMIVLNVGREQKVLGNQIFSLMIIATLVMTAIISPIVSLIYKPRKRLAPYKRRTMQNTRLDSELRVLVCIHTPRNVPTMVNLLEATHPHKRSPICAYVLHLVELTGRASAMLIVHANRQSGGPALNKTQAQTDHIITAFQNFEEHVGHVQVQPLTAISSYSTMHEDICNLAEEKRVSMVIIPFHKQQTVDGEMEDTIPQFRMVNHNLLQSSPCSLGILVDRGLNGSNRLIGNQASHEVVVLYFGGPDDREALAYGWRMSRHPRVKLIVMHFIQRKETTTQTPQEDLLFTNLDQSFTNGREEKLDEEYINEFKWVIANDDSVVYVDKYVSNGEETVAAIRSMTHANDLFIVGRGQGIMSPLTDGLTDWSECPELGAIGDLLASSDFETTASVLVMHQHVGQDQDGEEIFVIERPWQTSESYQHMKQQQHMQRYTMPVGMGHSLL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02556 838 Gene3D - 43 443 IPR038770 -
Cca08g02556 838 Pfam Sodium/hydrogen exchanger family 51 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca08g02556 838 PANTHER CATION/H + ANTIPORTER 12 829 - -
Cca08g02556 838 PANTHER CATION/H+ EXCHANGER 3 12 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02556 Cca-Chr8 59954890 59958323 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02556 13 814 Antiporter Super Family AT2G13620 62.082 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02556 - - gmx:100800514 1379.77