LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g02556	ATGAGCAACACAACGACGATGGCACCGTTTGATCTCTCAAATAGATCCATCATTTGCTACACGCCAACCATGACAACAACCAATGGCCTATGGCAGGGAGATAACCCTTTTGATTACTCCCTTCCTCTCTTTATCTTTCAATTAACGTTGGTGGTATTTGCCACACGTTTCTTTGTTTTCATCCTCAAGCCGTTTCGCCAACCGCGTGTCATTGCTGAAATCATGGGTGGATTGTTATTGGGTCCATCAGTGTTTGGTAGAAATGAAAGATTTGCCAATGCTATATTCCCTTTGAAAAGTGTGATGGTGATGGAGACAATGGCAAACATGGGTCTCATATACTTCCTCTTTCTGGTTGGGTTAGAAATGGACATTTCGATTATCAAACGCGCAGGAAAAAAGACACTGTCCATAGCCATTGCTGGAATGATATTGCCCTTTTTGGTTGGTATTGGTCTCTCATCTTTAATATTAGTGGACGACAAAAGCATGAGCCACCCCGGCTATGTCCTCTATCTTGCAACTGTTCTATCTGCCACTGCATTCCCGGTGCTTGCTAGAATGCTTGTTGTGCTAAAACTCATCAACACAGACTTGGGGAAGCTTGCTCTCTCAACTTCTCTCGTCAATGATGTGTGTACATGGATGTTGCTTGCTCTAGCTATAGCTTTATCAGAGCAAAACACTAGCAATTGGGCCTCTATTTGGGTTGTGTTATCAAACCTTGCTTTTGTTTCTTTCTGCCTTATTGTTGTTAGGCCAGCGGTCACATGGTTGATCAAGAGAACCCCAGAAGGAAAACCTTTCACTGAGTTCCAAATATGCATAGTGCTCACTGGTGTTATGATCTCAGCCTTTATTACAGATGTTCTTGGAACGCATTCTGTTTTTGGAGCTTTTGTGTATGGCCTAGTGATTCCAAATGGCCCACTTGGAGCTGCTATAATAGAAAAGCTAGAAGACTTTGTTTCCGGGCTTTTGCTTCCTCTCTTTTATGCCCTCATTGGGCTTAAGACTGATATCAGCTTGATCAGTGGAGCTAGTTCATGGGCATTTCTATTCGTGGTGATTCCCCTCTCTTGTGTAGGCAAGATTGTTGGGACTATGCTTATGACACTTGTGTTCCAGATACCAAACCGTGATGGGGTTGTTCTTGGTTTGCTTATGAACACTAAAGGCCTTGTTGAAATGATTGTGCTCAATGTTGGGAGGGAACAAAAGGTCTTGGGTAATCAAATTTTCTCACTCATGATTATTGCAACACTCGTAATGACAGCAATCATTTCTCCCATTGTATCATTAATTTATAAGCCAAGAAAAAGGCTTGCACCTTATAAAAGGAGAACAATGCAGAATACAAGACTTGATTCAGAGTTAAGGGTCCTGGTGTGCATTCACACCCCTAGAAACGTCCCCACAATGGTCAATCTCCTTGAAGCAACTCACCCCCACAAAAGGTCTCCCATATGTGCTTATGTGCTCCACTTGGTTGAACTCACTGGTAGAGCTTCTGCCATGCTCATTGTCCATGCCAATAGACAATCAGGAGGTCCAGCCTTGAACAAAACACAAGCGCAAACCGACCACATCATCACTGCCTTTCAGAACTTTGAGGAACACGTTGGTCATGTCCAAGTCCAACCCTTGACAGCTATCTCCTCATACTCCACCATGCATGAAGACATATGCAACTTGGCCGAGGAGAAAAGGGTATCCATGGTCATCATTCCTTTCCACAAGCAACAAACAGTTGATGGAGAAATGGAAGACACTATTCCACAATTCAGAATGGTGAACCACAACTTATTACAAAGCTCACCTTGCTCCCTTGGCATACTTGTGGATAGAGGCCTCAACGGATCCAACCGCTTGATAGGAAACCAGGCATCTCATGAAGTGGTTGTGTTATACTTTGGAGGACCAGATGATAGAGAGGCATTAGCCTATGGATGGAGAATGTCAAGGCATCCAAGAGTTAAGCTCATCGTCATGCATTTCATTCAAAGGAAGGAAACAACAACTCAAACTCCTCAAGAAGATTTGTTATTTACTAACTTGGATCAAAGTTTCACGAATGGGAGGGAGGAGAAACTGGATGAGGAGTACATAAATGAGTTCAAGTGGGTGATTGCAAATGATGACTCAGTTGTTTACGTAGACAAGTATGTGAGTAATGGAGAGGAAACAGTTGCAGCAATAAGATCAATGACCCATGCAAATGACTTGTTCATAGTAGGGAGGGGTCAAGGGATAATGTCACCACTAACAGATGGTTTAACAGATTGGAGTGAGTGTCCGGAGTTGGGAGCCATAGGGGACTTGCTAGCTTCTTCAGACTTTGAAACAACAGCTTCAGTGTTGGTGATGCATCAACATGTGGGGCAAGATCAAGATGGGGAGGAAATTTTTGTGATTGAGAGACCGTGGCAAACCAGTGAAAGCTACCAGCACATGAAACAACAGCAACACATGCAAAGATACACAATGCCAGTGGGAATGGGACACTCTCTTTTATAA	2517	0.4331	MSNTTTMAPFDLSNRSIICYTPTMTTTNGLWQGDNPFDYSLPLFIFQLTLVVFATRFFVFILKPFRQPRVIAEIMGGLLLGPSVFGRNERFANAIFPLKSVMVMETMANMGLIYFLFLVGLEMDISIIKRAGKKTLSIAIAGMILPFLVGIGLSSLILVDDKSMSHPGYVLYLATVLSATAFPVLARMLVVLKLINTDLGKLALSTSLVNDVCTWMLLALAIALSEQNTSNWASIWVVLSNLAFVSFCLIVVRPAVTWLIKRTPEGKPFTEFQICIVLTGVMISAFITDVLGTHSVFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLLPLFYALIGLKTDISLISGASSWAFLFVVIPLSCVGKIVGTMLMTLVFQIPNRDGVVLGLLMNTKGLVEMIVLNVGREQKVLGNQIFSLMIIATLVMTAIISPIVSLIYKPRKRLAPYKRRTMQNTRLDSELRVLVCIHTPRNVPTMVNLLEATHPHKRSPICAYVLHLVELTGRASAMLIVHANRQSGGPALNKTQAQTDHIITAFQNFEEHVGHVQVQPLTAISSYSTMHEDICNLAEEKRVSMVIIPFHKQQTVDGEMEDTIPQFRMVNHNLLQSSPCSLGILVDRGLNGSNRLIGNQASHEVVVLYFGGPDDREALAYGWRMSRHPRVKLIVMHFIQRKETTTQTPQEDLLFTNLDQSFTNGREEKLDEEYINEFKWVIANDDSVVYVDKYVSNGEETVAAIRSMTHANDLFIVGRGQGIMSPLTDGLTDWSECPELGAIGDLLASSDFETTASVLVMHQHVGQDQDGEEIFVIERPWQTSESYQHMKQQQHMQRYTMPVGMGHSLL	838

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g02556	838	Gene3D	-	43	443	IPR038770	-
	Cca08g02556	838	Pfam	Sodium/hydrogen exchanger family	51	432	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Cca08g02556	838	PANTHER	CATION/H + ANTIPORTER	12	829	-	-
	Cca08g02556	838	PANTHER	CATION/H+ EXCHANGER 3	12	829	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g02556	Cca-Chr8	59954890	59958323	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g02556	13	814	Antiporter Super Family	AT2G13620	62.082	0.0	1025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g02556	-		-	gmx:100800514	1379.77

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