Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02553 ATGAGCAACACAACGACGATGGCACCGTTTGATCTCTCAAATAGATCCATCATTTGCTACACGCCAACCATGACAACAACCAATGGCCTATGGCAGGGAGATAACCCTTTTGATTACTCCCTTCCTCTCTTTATCTTTCAATTAACGTTGGTGGTATTTGCCACACGTTTCTTTGTTTTCATCCTCAAGCCGTTTCGCCAACCGCGTGTCATTGCTGAAATCATGGGTGGATTGTTATTGGGTCCATCAGTGTTTGGTAGAAATGAAAGATTTGCCAATGCTATATTCCCTTTGAAAAGTGTGATGGTGATGGAGACAATGGCAAACATGGGTCTCATATACTTCCTCTTTCTGGTTGGGTTAGAAATGGACATTTCGATTATCAAACGCGCAGGAAAAAAGACACTGTCCATAGCCATTGCTGGAATGATATTGCCCTTTTTGGTTGGTATTGGTCTCTCATCTTTAATATTAGTGGACGACAAAAGCATGAGCCACCCCGGCTATGTCCTCTATCTTGCAACTGTTCTATCTGCCACTGCATTCCCGGTGCTTGCTAGAATGCTTGTTGTGCTAAAACTCATCAACACAGACTTGGGGAAGCTTGCTCTCTCAACTTCTCTCGTCAATGATGTGTGTACATGGATGTTGCTTGCTCTAGCTATAGCTTTATCAGAGCAAAACACTAGCAATTGGGCCTCTATTTGGGTTGTGTTATCAAACCTTGCTTTTGTTTCTTTCTGCCTTATTGTTGTTAGGCCAGCGGTCACATGGTTGATCAAGAGAACCCCAGAAGGAAAACCTTTCACTGAGTTCCAAATATGCATAGTGCTCACTGGTGTTATGATCTCAGCCTTTATTACAGATGTTCTTGGAACGCATTCTGTTTTTGGAGCTTTTGTGTATGGCCTAGTGATTCCAAATGGCCCACTTGGAGCTGCTATAATAGAAAAGCTAGAAGACTTTGTTTCCGGGCTTTTGCTTCCTCTCTTTTATGCCCTCATTGGGCTTAAGACTGATATCAGCTTGATCAGTGGAGCTAGTTCATGGGCATTTCTATTCGTGGTGATTCCCCTCTCTTGTGTAGGCAAGATTGTTGGGACTATGCTTATGACACTTGTGTTCCAGATACCAAACCGTGATGGGGTTGTTCTTGGTTTGCTTATGAACACTAAAGGCCTTGTTGAAATGATTGTGCTCAATGTTGGGAGGGAACAAAAGGTCTTGGGTAATCAAATTTTCTCACTCATGATTATTGCAACACTCGTAATGACAGCAATCATTTCTCCCATTGTATCATTAATTTATAAGCCAAGAAAAAGGCTTGCACCTTATAAAAGGAGAACAATGCAGAATACAAGACTTGATTCAGAGTTAAGGGTCCTGGTGTGCATTCACACCCCTAGAAACGTCCCCACAATGGTCAATCTCCTTGAAGCAACTCACCCCCACAAAAGGTCTCCCATATGTGCTTATGTGCTCCACTTGGTTGAACTCACTGGTAGAGCTTCTGCCATGCTCATTGTCCATGCCAATAGACAATCAGGAGGTCCAGCCTTGAACAAAACACAAGCGCAAACCGACCACATCATCACTGCCTTTCAGAACTTTGAGGAatatatttaa 1626 0.4287 MSNTTTMAPFDLSNRSIICYTPTMTTTNGLWQGDNPFDYSLPLFIFQLTLVVFATRFFVFILKPFRQPRVIAEIMGGLLLGPSVFGRNERFANAIFPLKSVMVMETMANMGLIYFLFLVGLEMDISIIKRAGKKTLSIAIAGMILPFLVGIGLSSLILVDDKSMSHPGYVLYLATVLSATAFPVLARMLVVLKLINTDLGKLALSTSLVNDVCTWMLLALAIALSEQNTSNWASIWVVLSNLAFVSFCLIVVRPAVTWLIKRTPEGKPFTEFQICIVLTGVMISAFITDVLGTHSVFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLLPLFYALIGLKTDISLISGASSWAFLFVVIPLSCVGKIVGTMLMTLVFQIPNRDGVVLGLLMNTKGLVEMIVLNVGREQKVLGNQIFSLMIIATLVMTAIISPIVSLIYKPRKRLAPYKRRTMQNTRLDSELRVLVCIHTPRNVPTMVNLLEATHPHKRSPICAYVLHLVELTGRASAMLIVHANRQSGGPALNKTQAQTDHIITAFQNFEEYI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02553 541 Gene3D - 43 443 IPR038770 -
Cca08g02553 541 PANTHER CATION/H+ EXCHANGER 3 12 540 - -
Cca08g02553 541 PANTHER CATION/H + ANTIPORTER 12 540 - -
Cca08g02553 541 Pfam Sodium/hydrogen exchanger family 51 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02553 Cca-Chr8 59919926 59921961 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02553 13 540 Antiporter Super Family AT2G13620 63.636 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02553 - - ccaj:109788366 1053.89