Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02550 ATGGGAAAAAAATCGACGCCGGCGGAGGAAGAAGAAGCGCTGCCGGAGCATCTGCGGTGCAGCCGGACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAGCTGTGCGAGATTCACTACCTGCAAGGTCGGCATCGGCAGCACAAGGAGAAGGTTCCGGAGTCGCTCAAGCTTCAGAGGAAGAGGAAAAACGACGCCGTTGCGGTTGAGATTGGGGCCATGAGGAAGCGGAAATCGGCGGAGGCGTTGGCCAGTAGGAGGAAGCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAGGAAGAAGGaatcgcaattgaatttgcattcgcatttgcatttcaatCACGATTTGCCGAATGCGGTTGTGGCTATCGGCTCCGCTTCAACGCCCAATGTGGCTTCTTCTCGCTGCGATGTTGTTGGTGTGACACCGCGTTACTTCAGGTCCAAGAATGTTGAGAGGGTCTCTGTTGGTAAGTTGCAGGTTGTGCAGTGTGAACGAACCTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTTATAAGGTGTTCAAGCTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCGGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGGCAAGTCAATACAGAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGTTATGTACGCTCCTTCCTGTACTAAAACAAATAAAAGAAGACCACTATTTGGACATAGAAACAAAAGCGAAAACTAAAGGGAAAAGAATTTCTGATATTCTCATCAAGCCGGTCGATTTTGGCTGCAATGAGAAAAACTTCTGCAATCACTGCAAAACACCCATATTGGATCTTCGTAGAAGCTGCCTTAGTTGCTCCTACAATGTTTGCTTAAGTTGTTCTCAGGCTAGTCAAGGAAGCACCTCTAAAGAAATCAACTCTTCTATATCCAAGCTACCTGACAAAATAAATGCTTGCATTTCTAGCAACCTTTTGGATGATAAGGCCATTTCTAATGGCAATTTAACTGATATGTCAATGTTACCGGAATGGACAAGTTGTAGTGGTGCTGACATTGTATCATGCTCACCAACAAAGCTTTGTGATTGTGGTGATAGCCACCTTGATTTTAAATATGTTTATCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAATTCAAGCTGCTCACTGTGTGTTGACAAAGATCATAAAACTAGCACATACAAGCAGTTACAGGAAGCAGCTCAAAGAGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCAATAGCAATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGACATCCTGTAGTAGTGCAAGATGTGCTCCAAAGTACGCCAAGCCTTAGTTGGGATCCGCTGGTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAAAATTAGGCAGTATTTTACTGGGTCTCTTAAATGTCAACCTCAGAAAAATACTTGCCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAATTATTGATGTTCTTCCAATTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAACTTAGCTGCAAATTTGCCACCGGGGAGTACAAAGCATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGACAAAGAAGTTGATTCTGTGACAAATCTGTGTTACGACTCATATGACATGGTTAATATTATGGCACATACCATGGACATCCCTCTGTCTACGGATCAGGTTACTAAAATAAGTAAGTTATTGAAAAAACACAAAGCTCTATGTCGAAGGGTATCTTCCAAAATTACAAATGAGCATGCAGAAGACAGGGAACAAAATGAAATGCATAGTATAATAAGAGAAGAAATCGACTTTTTAAAGAGAGTCAGTAGAACATCTTGCATCTCTACTGAAGCCAACACAATATCTAATCGGAATTTAGACAGAAATATTTCTGATGATGAAGAATGTTATTCCAATTCTGAAACTGAAAAGGCACAAAGCTCTTTAACTTTCCACAGGGCAGTTCTAAGCACTGAAATATGTCCAGATCATAATCCTAGAAATCCCTTAGAAAACTCAAACACCGATAAAATGAAGTTTACTGAGAATTCTGGTGCCCAGTGGGATGTCTTTCGAAGACAGGATGTGCCAAAGCTCTTAGAATACCTTAAAAGACACTCTCATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCAATTCTAGATCAGAGCTTCTTCCTTGACAATGCTCACAAGATTAGACTTAAGGAAGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGCTGGGGAAGCTGTCATCATTCCTTCCGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTTGTGTCCCCCGAGAATGTTAATGAGTGTATCCAATTGATTGATGAAGTCCGGCTGCTTCCAAAAGACCATAAAGCAAAAGTGGAAAAGCTGGAGGTGAAAAAAATGGCCCTTTATAGCATGAGTACAGCAATAAAAGAAATACATGAGCTTACATGCAAAACATGA 2877 0.406 MGKKSTPAEEEEALPEHLRCSRTDGRQWRCRRRVMENLKLCEIHYLQGRHRQHKEKVPESLKLQRKRKNDAVAVEIGAMRKRKSAEALASRRKQLELIRMVLQREVEKKRKKESQLNLHSHLHFNHDLPNAVVAIGSASTPNVASSRCDVVGVTPRYFRSKNVERVSVGKLQVVQCERTLKKGRRKKCHWCQRSDSWSLIRCSSCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLASQYRDSESKEYLAGKNRVDRILHFHYLLCTLLPVLKQIKEDHYLDIETKAKTKGKRISDILIKPVDFGCNEKNFCNHCKTPILDLRRSCLSCSYNVCLSCSQASQGSTSKEINSSISKLPDKINACISSNLLDDKAISNGNLTDMSMLPEWTSCSGADIVSCSPTKLCDCGDSHLDFKYVYPLSWIKEMEVKAEEIVCSYDFPETLDKNSSCSLCVDKDHKTSTYKQLQEAAQREDSNDNYLFYPTVLDINSNHFEHFQKHWGKGHPVVVQDVLQSTPSLSWDPLVMFCTYLERSMTRYENNKDLLEACLDWFEVEIKIRQYFTGSLKCQPQKNTCHEMLKLKGWLSSQLFKEQFPAHFAEIIDVLPIQEYMNPLSGLLNLAANLPPGSTKHDIGPYVYISYGCADKEVDSVTNLCYDSYDMVNIMAHTMDIPLSTDQVTKISKLLKKHKALCRRVSSKITNEHAEDREQNEMHSIIREEIDFLKRVSRTSCISTEANTISNRNLDRNISDDEECYSNSETEKAQSSLTFHRAVLSTEICPDHNPRNPLENSNTDKMKFTENSGAQWDVFRRQDVPKLLEYLKRHSHEFSYTSEHHEKMVHPILDQSFFLDNAHKIRLKEEFKIEPWTFEQHAGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVNECIQLIDEVRLLPKDHKAKVEKLEVKKMALYSMSTAIKEIHELTCKT 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02550 958 SUPERFAMILY Clavaminate synthase-like 498 942 - -
Cca08g02550 958 ProSiteProfiles Zinc finger RING-type profile. 188 234 IPR001841 -
Cca08g02550 958 Pfam JmjC domain, hydroxylase 807 904 IPR003347 -
Cca08g02550 958 SMART cupin_9 599 921 IPR003347 -
Cca08g02550 958 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 957 IPR045109 GO:0032454|GO:0033169
Cca08g02550 958 Pfam WRC 15 56 IPR014977 -
Cca08g02550 958 Gene3D Cupin 490 930 - -
Cca08g02550 958 ProSiteProfiles JmjC domain profile. 618 921 IPR003347 -
Cca08g02550 958 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Cca08g02550 958 Coils Coil 85 112 - -
Cca08g02550 958 PANTHER PROTEIN B160 9 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02550 Cca-Chr8 59848710 59854718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02550 15 54 GRF Transcription Factor Family AT2G22840 52.500 4.20e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca08g02550 JmjC 4e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02550 K15601 - gmx:100802129 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01343 09 36450753 36457794 Cca08g02550 08 59848710 59854718 PCT