Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02548 ATGGGGAGAGCACCTTGTTGTGACAAAAATGGTCTCAAGAAAGGGCCATGGACAACCGAAGAGGACCAGAAACTTGTTGATTACATTCAAAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGTTGGACTAACTATCTTCGACCAGATATAAAACGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACTCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTTACACACAGTCCTCGACTTGATCTATTGGACATCTCTTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATGTTCCTTGGCATGCAGCACTCCTTGGTCAACCCTGAGCTTTTGAGGTTGGCTTCTTCAATCATCTCCTCACAGCAACACAAAGACTCAAACACGTGTGCTCACAAAAGTGATCAACAGAACCAGCTTTGCCATCCCCAAATTCCAGAGTTTGTCCAATTTCAAGACCCTGTTCAAGAAGTTCCTGCATGCACCATGTTCAACACTACCACTTGTGTTTCACTGCCTATAACTCAACCACAGTTGGTTGAGCCTAATAATGTGGACCCATATCCATCATCAAGTTTCACAGACTTCACTTACCAACAACATTCTCATGATGAGCTAATAAGTGATGATTGGCACAAAAGTGGGGTTGCTTTAAACACCTTAACAGATGACTATGTCCCTCAATTATCAAGCTGTAATTATTATAGTTCTGATGGTCAAAGTCTCACGTATCCTCCATTGTCCGAACCTTCAACCTTTTATTCCAGTAACAGCAATCAGAACTTCAACTTCGCTTCAGTTCTATCCACACCTTCGTCAAGTTCCACACCGTTGAACTCGAACTCCACGATAATCAACGGGAGCAGCACAGAAGATGAGAGAGATCAAAGCTATGACAGTAGCTACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTCAATGAGTTCATGTAA 1110 0.4198 MGRAPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMFLGMQHSLVNPELLRLASSIISSQQHKDSNTCAHKSDQQNQLCHPQIPEFVQFQDPVQEVPACTMFNTTTCVSLPITQPQLVEPNNVDPYPSSSFTDFTYQQHSHDELISDDWHKSGVALNTLTDDYVPQLSSCNYYSSDGQSLTYPPLSEPSTFYSSNSNQNFNFASVLSTPSSSSTPLNSNSTIINGSSTEDERDQSYDSSYMLKFEIPDILDVNEFM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02548 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca08g02548 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca08g02548 369 CDD SANT 69 112 IPR001005 -
Cca08g02548 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca08g02548 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca08g02548 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 364 - -
Cca08g02548 369 CDD SANT 16 61 IPR001005 -
Cca08g02548 369 Gene3D - 13 66 - -
Cca08g02548 369 MobiDBLite consensus disorder prediction 322 347 - -
Cca08g02548 369 MobiDBLite consensus disorder prediction 322 342 - -
Cca08g02548 369 SMART sant 66 114 IPR001005 -
Cca08g02548 369 SMART sant 13 63 IPR001005 -
Cca08g02548 369 Gene3D - 69 116 - -
Cca08g02548 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca08g02548 369 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca08g02548 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca08g02548 369 PANTHER TRANSCRIPTION FACTOR MYB41 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02548 Cca-Chr8 59820060 59821725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02548 1 369 MYB Transcription Factor Family AT4G21440 54.286 1.25e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g02548 Myb_DNA-binding 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02548 K09422 - gmx:102660551 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01340 09 36426865 36428479 Cca08g02548 08 59820060 59821725 PCT