Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02543 ATGActttctttacttgcttctttttcttccttcttgcttCATCAGCCACTGCTTGTGATCGCTGCCTTCAACAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGGCTTAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCCGGTTGTGGTGCCTGCTTTCAGATACGATGCAAGAATCCAACTGTGTGCAGCAAAGAAGGCACCAGAGTGGTGTTGACTGATCTCAATCACAATAATAAAACTGACTTTGTGCTCAGCAGTAGAGGGTTGCGAGGGTCTCTCCTGCTGGTTGGGATGGTTGCGAGGGTTTTCTCCTGCTGTAAACGACGATTTGTTGggggtgcgaggaagggggtgtggggtgtggggaacgggggtggAAAAAGAAGTGTAAATTTAAGAGTTGAAAAAGAAGTGTAA 483 0.3913 MTFFTCFFFFLLASSATACDRCLQQSKASYFSKASALSSGACGYGSLALGLSGGHLAAGVASLFKDGAGCGACFQIRCKNPTVCSKEGTRVVLTDLNHNNKTDFVLSSRGLRGSLLLVGMVARVFSCCKRRFVGGARKGVWGVGNGGGKRSVNLRVEKEV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02543 160 PANTHER EXPANSIN-B3 5 110 - -
Cca08g02543 160 Pfam Lytic transglycolase 57 108 IPR009009 -
Cca08g02543 160 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 135 IPR007112 -
Cca08g02543 160 PANTHER EXPANSIN-LIKE A1-RELATED 5 110 - -
Cca08g02543 160 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cca08g02543 160 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cca08g02543 160 Gene3D - 12 112 IPR036908 -
Cca08g02543 160 SUPERFAMILY Barwin-like endoglucanases 8 108 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02543 Cca-Chr8 59793831 59794517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02543 3 158 Expansin Gene Family AT3G45960 50.641 1.66e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02543 - - ccaj:109807017 234.958