Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02542 ATGGATGACGAACAACCATCGACCACCGCCGTCTCCGGTCTCCGGCAAGCCGTGGCGCTCATCTCCTCTTTGATCTCCCTCTCCCTCTCGATCAGGGTCTTCGCCGGAAAATGGCAACTGATTCGGAGCAGGCTGGAGGAGCTCCACTCGGGACTCGTCGCTGGTGATGCCACGTCACTCTCCGGCGAGCTCCCGAAGATAACGGGGACGGCGGAAGAGTGCCGCGAGCTGGCGCGGCGGTGCGTGGATCTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGACTTGGACGTGACGTTGGGGAAGTTGGAATCGCACGTGAAGAAGCTCTCTGAGATATTCAAGAAGGGCGTGTCCATGCATGGCTACGCTGTGGTGGTTTCAAGGCCTGGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACCTGAGGGACTTGCTGACTCGGATGAAGGTGGGTGATTCGGGTATGAAGAAGCAAGCGTTGATGAACTTGCATGAGGTGATTGTGGAGGATGAAAAGTACGTGAAGTTGGTTGTTGAGGTTTCTGAGTTTGTCCATGTGTTGGTGGATTTCCTAGGATCTCTCGAGGTTGAGGTTGTTGAAGAGGCTGCCAAGGTTGTTTCTGTTGTTGTGGGGTTTGACTCTCACAAAGGGGTTTTGGTTGGTGCTGGTGTTATTGCCCCTTTGATTAGGGTTTTGGAATGTGGGAGTGAGGTGGGGAAGGTTGGTGCTGCGAGATGTTTGCAAAGGTTGACCGAGAATTCTGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCCTTGTTGAGGGTTTGTGAAAGTGAGGAGCTTTGTAAAGGGGAATTGGTTGGTCCTTCTTGTGGGGTGTTGAGGAATCTTTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGATGGTGTGGTTTCAACTTTTGTGCGGCTTGTGAGGTCAAGGGATGAAGTTGTTCAGGTGAGTTCTATTGAGTTGATTCAAAGCATTGCCTCCGGTGATGAGTTGGTTAGGCAGATGGTGATTAGAGAAGGAGGGGTTCGTGTTCTTTTTCGTGTTTTGGATCCTAAGTTGACTTGTTCGTCTAAAACAAGAGAGGTTGTGATGAGGGCCATTGAGAATTTGTTTTTTTCATCGCCTAGTTGCGTAAGTGTTTTGATGAGTTATGGCTTTGTGGATCAATTGATGTATTATGTTCGAAATGGGGAGGTTTCGATTCAAGAGTTGGCTTTGAAGGTGGCGTTTAGATTGTGTGAGAAATCTGAGGAGGCTAAGAAGGCTTTGGGTGATGCAGGCTTCATGGCTGAGCTTGTCAAGTTTCTAAATGCGAAATCATATGAAGTTCGTGAAATGGCAGCAGAGGCTTTGTCTGGCATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGATCAAAACATTGCTCTTCTTCTGCAGTTGCTGGATCCAGGGGAGAGTAATTCGGGTAATAAGAAGTTGCTGATCTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGGAAAAAAATTGTGAGTTCTGGGTATGCCAAAAACATAGAGAGGTTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCGCAAACCGGTTCCGCAGTATGTTGAGTGGAATTTGGCACTCTTGA 1692 0.4858 MDDEQPSTTAVSGLRQAVALISSLISLSLSIRVFAGKWQLIRSRLEELHSGLVAGDATSLSGELPKITGTAEECRELARRCVDLSYSGKLLMQSDLDVTLGKLESHVKKLSEIFKKGVSMHGYAVVVSRPGFGACKDDMRFYLRDLLTRMKVGDSGMKKQALMNLHEVIVEDEKYVKLVVEVSEFVHVLVDFLGSLEVEVVEEAAKVVSVVVGFDSHKGVLVGAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRVCESEELCKGELVGPSCGVLRNLCGVEEIKRFMVEDGVVSTFVRLVRSRDEVVQVSSIELIQSIASGDELVRQMVIREGGVRVLFRVLDPKLTCSSKTREVVMRAIENLFFSSPSCVSVLMSYGFVDQLMYYVRNGEVSIQELALKVAFRLCEKSEEAKKALGDAGFMAELVKFLNAKSYEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGESNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERFAEAEVSSDAKRLVRKLSANRFRSMLSGIWHS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02542 563 SUPERFAMILY ARM repeat 144 545 IPR016024 -
Cca08g02542 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 563 - -
Cca08g02542 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 563 - -
Cca08g02542 563 Gene3D - 143 552 IPR011989 -
Cca08g02542 563 SMART arm_5 428 468 IPR000225 GO:0005515
Cca08g02542 563 SMART arm_5 172 213 IPR000225 GO:0005515
Cca08g02542 563 SMART arm_5 341 384 IPR000225 GO:0005515
Cca08g02542 563 SMART arm_5 255 298 IPR000225 GO:0005515
Cca08g02542 563 SMART arm_5 299 339 IPR000225 GO:0005515
Cca08g02542 563 SMART arm_5 214 254 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02542 Cca-Chr8 59783130 59784989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02542 126 417 U-box Gene Family AT2G23140 23.490 1.06e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02542 - - gmx:100783537 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01333 09 36221928 36224072 Cca08g02542 08 59783130 59784989 PCT