Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02541 atGCCGAGTATCACTTTCTTCCACCGTTTTTCTAGAGCTTTCCGTGACAACCACTCGCATCTCAACCTTGTCCTGCTCTGCACTGCCGTAAGTGGTGGTGGTCTTTTGGCTTATGGTGAGAATGTTGCACTTGCACCTGAAGAGGCAGTTACCGATAAGAAAAAGGTGGTGGTGCTAGGAACTGGTTGGGCGGCTACTAGTTTCTTGAAGGATCTGAAGAATCCAAAATATGAAGTTCAAGTGGTTTCGCCTCGTAACTATTTTGCGTTCACTCCTTTGCTGCCTAGCGTTACGTGCGGCACCGTCGAAGCACGCAGCATTGTTGAGCCAGTTCGCAATATTTTTAACAAGAAAAAGGTGGACGTACAATTCAGTGAAGCAGAATGTTTCAGGATTGATGCAGAAAATCGGAAAGTTTACTGTCGATCTAGTGTGAACAATAATTTGAATGGGAAAGAAGAATTTGTCGTGGATTATGACTACCTAATAATCGCTGTGGGCGCTAATGTCAACACATTTAATACTCCAGGAGTGGTGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGATTGCTTCGAGAGAGCAAATTTGCCGGATGTAAGTGAAGATGAGAAGAAAAGAATTCTTCACTTTGCTATTGTTGGAGGTGGACCTACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTATCAACGAGGATTTGGTCCGTTTATATCCTGGGATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCTGGAGATCATATCTTGGGCATGTTTGATAAGAGAATCACTGCTTTTGCTGAACAAAAGTTTCGTAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCTGAGAAAGAAATTTCAACTAAAGAACTGAAAAATGGAGGAGAGGTTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACAAATTGGTCAGGCTAGCAGGCGTGCTCTAGCTACAGACGAATGGTTGAGAGTTGCAGGGTGCAACAATGTGTATGCGCTTGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGAAGATATTGCGGTGATCTTTAAGAAAGCTGACAAAGACAATTCTGGAACACTTACGGTCAAAGAATTTCAAGAGGTCATGAAAGATATCTGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGAGACATTGCTGATTTATTGAAGGAAGCCAAGGGAGATGATAAAAAAGAATCAACTGAACTGGATATCGAAGAACTGAAAACAGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAACAAGGCACTTACCTGGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCCGAGGGTCCTCTCAGGTTCAGGGAAGATGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAGTTCGCTCCTTTGGGAGGAGAGCAGACAGCAGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATTTGA 1740 0.4253 MPSITFFHRFSRAFRDNHSHLNLVLLCTAVSGGGLLAYGENVALAPEEAVTDKKKVVVLGTGWAATSFLKDLKNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFNKKKVDVQFSEAECFRIDAENRKVYCRSSVNNNLNGKEEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFINEDLVRLYPGIKDLVKITLLEAGDHILGMFDKRITAFAEQKFRRDGIDVKTGSMVVKVSEKEISTKELKNGGEVKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVAGCNNVYALGDCATINQRKVMEDIAVIFKKADKDNSGTLTVKEFQEVMKDICERYPQVELYLKNKQMRDIADLLKEAKGDDKKESTELDIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFREDGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSSI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02541 579 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cca08g02541 579 SMART efh_1 381 409 IPR002048 GO:0005509
Cca08g02541 579 SUPERFAMILY EF-hand 370 466 IPR011992 -
Cca08g02541 579 PANTHER NADH DEHYDROGENASE 3 579 IPR045024 GO:0003954|GO:0006116
Cca08g02541 579 Coils Coil 441 461 - -
Cca08g02541 579 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 380 IPR023753 GO:0016491
Cca08g02541 579 Pfam EF hand 383 408 IPR002048 GO:0005509
Cca08g02541 579 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Cca08g02541 579 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Cca08g02541 579 PANTHER NAD(P)H DEHYDROGENASE B2 3 579 - -
Cca08g02541 579 SUPERFAMILY FAD/NAD(P)-binding domain 220 374 IPR036188 -
Cca08g02541 579 Gene3D - 45 424 - -
Cca08g02541 579 Gene3D - 425 578 - -
Cca08g02541 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cca08g02541 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02541 Cca-Chr8 59764629 59771386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02541 1 579 Chloroplast and Mitochondria Gene Families AT4G21490 73.070 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02541 K03885 - gmx:100802661 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01331 09 36124728 36130285 Cca08g02541 08 59764629 59771386 PCT