Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02536 atggcatcggcttcctcttcTTCCTCCAAACTCTGCTTCAATTCTGACTGCAAGGAATTGAAGCCCGAAAGACCTAAGAAAGGTTGGAGACTCCGTAGCGGAGAACTAGCCGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAGTGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGGAAGCGGATTCATTGTGGATGTATTGTTTCAAGTCATGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAATGTTTTGCATGTGCCCGAAAAAATTTTATTTTGCCATCTAACCTGCCATGGCCACAATCTTTTTCCCTTCAAAGTCGTATATCGGATAGACTTAGAGACCTATCTGCCAAAGGTTGGACTCAGTTAGCTGGATCAGGTCCTGTACCGTGGAAACAAGCACCCAGTCTTTTCAATTCTGCTTCTTCATCTGACATGCTTCCAGACGTGCCTTCTTTAGTTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGATTACCTTCTTCAACCTTGGAAAAGAAAAATGAAGATTTGTCTGGAATGTCAGTTAACTGGAGTGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAATCAAGTTCATGTTTAAATATGTGTCCACAGCCTCCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTACCTAATTCATGTCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCAACCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGAAATATGCATTTAGCACCTGACTCATCATGTGAGGCTCAGATACGCAATGGACGGCCTCGAGCGGATGCCCGAGGAAGAAACCAGTTACTTCCACGGTACTGGCCCAGGTGTACTGATCTGGAGCTACAGCAAATATCTATAGATTCAAATTCCGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTGGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTGTGCCATCTGATCAGGACAATGAAACCAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCGTGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCATTGGGGAGCAAATCTTTAATATCTAGAAAAAGAAAGAGCAGCATATTGGGCTCAAAGAGTAAACGTCTAAAAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGCCCGCCGCCTAGCCATCTTCCAAGCATAGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGTAGTTTTCCACTCTTGCTTCACATCAGAAAGGGTTATGGATAGCTAA 1689 0.4257 MASASSSSSKLCFNSDCKELKPERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSSASGWRSCETCRKRIHCGCIVSSHAFVLLDPGGIECFACARKNFILPSNLPWPQSFSLQSRISDRLRDLSAKGWTQLAGSGPVPWKQAPSLFNSASSSDMLPDVPSLVELSNSFDKMYCNERLPSSTLEKKNEDLSGMSVNWSVKLGSREMMLMNGMRNEDKSSSCLNMCPQPPLKEESSPQPFGLPVPNSCQNERNGQLGVTGSQPQQTPPPPGKQFNGNMHLAPDSSCEAQIRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLKIENEDLIELKITWQEAQGLLRPPPSHLPSIVVIEGFEFEEYEVVFHSCFTSERVMDS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02536 562 MobiDBLite consensus disorder prediction 438 454 - -
Cca08g02536 562 MobiDBLite consensus disorder prediction 435 459 - -
Cca08g02536 562 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Cca08g02536 562 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 451 - -
Cca08g02536 562 Gene3D - 313 439 IPR015300 -
Cca08g02536 562 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 447 547 - -
Cca08g02536 562 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 451 - -
Cca08g02536 562 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Cca08g02536 562 SUPERFAMILY DNA-binding pseudobarrel domain 332 434 IPR015300 -
Cca08g02536 562 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 447 547 - -
Cca08g02536 562 MobiDBLite consensus disorder prediction 228 279 - -
Cca08g02536 562 CDD B3_DNA 333 434 IPR003340 GO:0003677
Cca08g02536 562 MobiDBLite consensus disorder prediction 242 264 - -
Cca08g02536 562 SMART B3_2 335 436 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02536 Cca-Chr8 59675210 59686849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02536 8 547 B3 DNA Binding Superfamily AT4G32010 44.689 1.14e-134 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca08g02536 B3 6.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02536 - - gmx:100807252 1017.3