Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02535 ATGAACGACCTAATCTCAAGCTCCTTCAGAAAATACACCGACTTGAACGAGCAGTCCCACATCGACGATGTGGAGGCCGGCAAGGAAAGTGTCAACCTCGATAAATTCTTCGACGAAGTGGAGAACGTTAAAGAGGACATGAGGATCTTCGAGCCAGAATGGACCAAGATGTTCAGCAGAAAGGGAAAGCTTGAGGCTCTAGAACGTTCCAACGCAGCCAACAGAAACCTTCCAGGCTGTGGTCCAGGTTCTTCAGCAGACCGAACCAGAACCTCAGTGGTCAGTGGCCTTGGGAAGAAACTGAAGGACTTGATGGACGATTTTCAAGGGTTGAGAGCAAGAATGCAGAACGAGTACAAGGAAACGGTTGAACGAAGGTACTTCACCATCACAGGAGAGAAGGCTGATGAGGAAACCATAGAGAACTTGATCTCAAGTGGAGAGAGTGAGAGTTTTCTTCAGAGGGCTATTCAGGAACAAGGGAGGGGTCAGATTATGGACACCATATCCGAGATTCAAGAAAGACGCGACGCTGTTAAGGAGATAGAGAAGAACTTGATCGAGCTGCATCAGGTGTTTTTGGACATGGCGGCTTTGGTGGAGTCTCAAGGGCAACAACTTAACAACATAGAGAGCCACGTGGCGCATGCTAGTTCTTTTGTGAGAAGAGGCACTGAGCAACTTCAAGAAGCCAGAGAGTATCAAAAGAGTTCCAGGCAGTGGACTTGTTATGCCATACTTCTTGGCATTGTTCTTGTTATTGTGCTCCTCTTTCCTCTCTTGACATCACTTTTGCCTCACTTGATGTTTTGA 813 0.4723 MNDLISSSFRKYTDLNEQSHIDDVEAGKESVNLDKFFDEVENVKEDMRIFEPEWTKMFSRKGKLEALERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQNEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERRDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREYQKSSRQWTCYAILLGIVLVIVLLFPLLTSLLPHLMF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02535 270 SMART tSNARE_6 164 231 IPR000727 -
Cca08g02535 270 Pfam Syntaxin 60 204 IPR006011 GO:0016020
Cca08g02535 270 SUPERFAMILY t-snare proteins 33 224 IPR010989 GO:0016020|GO:0016192
Cca08g02535 270 CDD SynN 61 156 IPR006011 GO:0016020
Cca08g02535 270 SMART SynN_4 28 120 IPR006011 GO:0016020
Cca08g02535 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
Cca08g02535 270 PANTHER SYNTAXIN 7 57 IPR045242 -
Cca08g02535 270 Gene3D - 52 126 - -
Cca08g02535 270 Gene3D - 160 261 - -
Cca08g02535 270 CDD SNARE_syntaxin1-like 168 230 - -
Cca08g02535 270 PANTHER SYNTAXIN-124-RELATED 61 261 - -
Cca08g02535 270 Pfam SNARE domain 206 257 IPR000727 -
Cca08g02535 270 ProSitePatterns Syntaxin / epimorphin family signature. 175 214 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca08g02535 270 PANTHER SYNTAXIN-124-RELATED 7 57 - -
Cca08g02535 270 PANTHER SYNTAXIN 61 261 IPR045242 -
Cca08g02535 270 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02535 Cca-Chr8 59673095 59674192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02535 1 270 SNARE and Associated Proteins AT1G61290 68.421 5.80e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02535 K08486 - gmx:100818999 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01314 09 35868755 35869672 Cca08g02535 08 59673095 59674192 PCT