Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02523 ATGGGAACGGAGGTGATGGGGAGGTGGGGCACCTGGGAGGAGCTCCTACTCGGCGGGGCCGTTCTCCGCCACGGAACCCGAGATTGGAACGTCGTCGCCGCCGAGCTCCGGGCCCGAACAGTTTCTCCCTACACCATTACTTCTGAGGTCTGTAAAGCTAAATATGAAGACTTGCAAAGACGTTATGCTGGGAGCAAGGCTTGGTTTGAGGAGCTTAGGAAGACAAGAGTAGCAGAGCTGAAGAGGGCTCTGGAGCTATCTGAAGATTCAATTGGGTCTCTCGAATCTAAGCTTGAAAGCCTCAAGGCTGGGAAGAATGAGAAAAGAGATGATTGTCATGTTGATAAAGGATCAGGTCATCCAAAGTTACATGTAGCATCACAGAAATTGGAGAGAGTTGAATCTTCCACTAAAGAGACATCAAAGGATGGACTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAGTGTCCACTTCCAGCTGAAGATATGGAGGCTAAGCCTGAGGTTTCGCACTCCACTGAGCAGGATAAAGTTTTGAGTGTAGATAAGTTGGCACATACCATATACGAAGGACATGGAGGAAGTTTCAGAAAACGGAGAGGGAAGAGGAAGCGGAAGGATTGCGGCAGGAATATGAAAGAAGCTAGTGTGGGGGAAAGTGATTTGTTGGATTCAGCTGACGTGGTTTCCCGGTGTAAAGAAAGTTCTACCAGCAACTGTGGTGAAGTTGCCAAATCTTGTGGTGCAGATGATCAAAATAGGAACCTGAAAAAGGAACGCGTGGAAAACATTATGGAGATTTTGGATTCTGTTTTTGAAACTAAAGGTGCTTCTGCCTTCCGTCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCAGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAAACAATTAAGTCAAGTGTAGAACTTTTCCGAGACTTGCTTCTACTCACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGTGAATACAAATCTGCCCTTCTGCTAAGAGACATTGTCACTAAAAAAATGAAAGAAAGTTTGAAGGGTACAAGCACCAAAGCCACCATACAAGCTACTACTAATGAGCCTATTAAATTACCTGTGCAAAATCCTCATGTGAAACCAAGAAGTGTAAGGCCAGGCAACAGAAAAATAGTTGCAAAAGCAGTTGGTGGCAACAATTCTGCATCAGGGGTGTCACATGGAACTAAAAAACCTAGTAAAGTTGATTCTCCATCTTCTGTAGAATCCTTAACTGTGAAGAAGAAAGGTTTTGGTCGACCAAAAAAAGTTGGACGTGGGGCTGCAGGTCAAAGGCCTGCAATACCAACGAAGGGAAAGAAAAGAGTTAGAACAAAGTGA 1419 0.4503 MGTEVMGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVSPYTITSEVCKAKYEDLQRRYAGSKAWFEELRKTRVAELKRALELSEDSIGSLESKLESLKAGKNEKRDDCHVDKGSGHPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPLPAEDMEAKPEVSHSTEQDKVLSVDKLAHTIYEGHGGSFRKRRGKRKRKDCGRNMKEASVGESDLLDSADVVSRCKESSTSNCGEVAKSCGADDQNRNLKKERVENIMEILDSVFETKGASAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKSALLLRDIVTKKMKESLKGTSTKATIQATTNEPIKLPVQNPHVKPRSVRPGNRKIVAKAVGGNNSASGVSHGTKKPSKVDSPSSVESLTVKKKGFGRPKKVGRGAAGQRPAIPTKGKKRVRTK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02523 472 SMART bromo_6 263 367 IPR001487 GO:0005515
Cca08g02523 472 Coils Coil 77 97 - -
Cca08g02523 472 MobiDBLite consensus disorder prediction 408 472 - -
Cca08g02523 472 MobiDBLite consensus disorder prediction 102 139 - -
Cca08g02523 472 Pfam Bromodomain 271 351 IPR001487 GO:0005515
Cca08g02523 472 MobiDBLite consensus disorder prediction 412 437 - -
Cca08g02523 472 CDD Bromodomain 264 362 - -
Cca08g02523 472 SUPERFAMILY Bromodomain 258 366 IPR036427 GO:0005515
Cca08g02523 472 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 472 - -
Cca08g02523 472 Gene3D - 256 377 IPR036427 GO:0005515
Cca08g02523 472 PANTHER BROMODOMAIN PROTEIN 1 472 - -
Cca08g02523 472 ProSiteProfiles Bromodomain profile. 278 348 IPR001487 GO:0005515
Cca08g02523 472 MobiDBLite consensus disorder prediction 102 158 - -
Cca08g02523 472 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02523 Cca-Chr8 59548033 59552998 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g02523 Bromodomain 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02523 - - gmx:100804245 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01305 09 35731678 35737018 Cca08g02523 08 59548033 59552998 PCT