Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02517 ATGATGGCGGATGAGGGATTCGATTATCCGTACGGGAACACCGTCGATGACGATAAGCTCTGCATCGATCTCGAGACCATCATGAGCGTTCTCGACGAGGATACCGATCCTTCCGGGAGTAGTCCTGAGGATTCTACATTGAAAAATGTTTCACCGGGTGAATCTGGTATCCATGACAATTTTCTACTTCAAAATGGGGCCTCTGTGCTTCAATGTGAACATGAAAACCAGGGGCCTTCTTCACATACTTTCTCTTCCCCAAATGCTCATGCTGGTGGTTATAGGGAGTCGTTCTCAGTGGGTGAAAATGATGAAATTTGCTTCACAGAACGCCCAGGAGTTTCAAATTGTGAGATACCTGCTTACATTGCTGACACAAGGTTCCCTGATCCTGAGGCGAATTCAAGCAACGTAGTCTGTGGAGATAATTTGAATCTGTCTCTATGGAAGTCTGAAAATGACAGCCAAGTCAAGCATGCAGGATATGATGCTGAATCTGAACATGCTTCACATGGATCTAACGTTGATAATGTTGATGTAAATATTGAAGATTATGGTAACTATATGAAAGACATCATCGGAATTTCTGGGAAACAGGAAAATGACTCGTGTACATCTTTTGAAATGCCGTTTGTGGATGCTGATATATCTTCACATGTTGCAACATCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGGTTATAGTGACTTTTATCCATCTTTGAATTGTTATCGAGGTATGGATGATAGATCTGTTGTTGCCAACACTTCTGGTTGTTTGTCTAATGGTGTATATCATGAGTGGAAAAATGAAGAAATGATGAGGAACACGAAGGTTGCTAAAATGGAGTTCTTTGCTGATACAACACATGCGAGTAGTGGCATGCATTTCAGCCCTAATGGAGGGATATCCTTTCCAGATAGTCAATTTATGTTTGCAGATAGTAACTATGCATCATTTTTTCCTGGTAATGTTAGTTTTGAAGACAATACATCAATGCAACTCTCAATTTGGGCTCCATATATATCAAGTGGAGGTCAATCACTAAATGTCAAAGCTGAAAGGGACGAACAGATTATGCCTTACCAAAGTTCCGTTCACAGTGATGATACTGAGTTCAATGCTGGTCAAGAGACGAAACAACTACACGGTATTTTTGGTGCTGTTGGATGTCAGGGTAATGATTTATTCAAGTGTGAGGATAGTGTTACTATAGCAACAACTGAGAAAGCCAATTATTATCACGATGCTATAGATGGATCTGCCAATAACTTTCCAGAACTCATGGGAAATTTGAATTTAAAACCATTAGATAAATCTTTGTATAATGCCCAGACATTAATTGCCAGTGGGAAGCAGTATAATTGTGTTATGAATAAGGGAGAGGGCAAAACAATTGAACATAGAAGTATTGATTCTCAAGTTCCAAAGGGAAACATTGAGAGATCCAGTATTGAGGATGATTCTGATGTTTGCATTATTGAAGGCATCAGTCACCCTGCACCTATAATTCGACCCGTGGAGCTTGGGAATTGCCTTAATGCATCACAATCTTCTAGAGGTGGTTATACTCATTCTTATATGGTCGGAGGTATGAGGCCAAAGGCGCGTGACGAGCAATTCATATTACGAGTTGCATTGCAGGATCTATCCCAGCCCAAGTCAGAGGTTAGTCCACCAGATGGACTGCTGACAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGCTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACCATTGCTTTAATATTGAAGGAAAGACCTACTACGTTACTGAGTAAATGCAACAATGTGCAAAAATGTGAATTAGAAACTTTGAATCTGGATGCGGATGATGATCAGCTTCCTGAGAATGGTGTGAAGAATGAATCTAATATGTGTCAGGATTTGTCTAGTAGAATTCCGAACAAGAGCATAAATTTGTTAGTGCATGCAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCTTGCGACAATGGGCTGATGAGTTGCAAAATAAGGTAACTGGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCTAAGTATGATGTTGTTTTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAAAAGAAACTTATGATGATCTTGCAGTACCAAGTAAGAAAAGGAAGTGCCCTCCTAGTTCTAGTAAAAGTGGCAAGAAGGGATTGGACACTGTGATGCTTGAGGCCCGTCCTCTGGCAAAAGTGGCTTGGTTTAGAGTTGTCCTTGATGAAGCCCAGAGTATAAAGAATCACAGAACCCAAGTTGCAAGGGCCTGTTGGGGTCTTCGGGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATTCAGAATGCAATTGATGATCTCTACAGTTATTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAATCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACTATAATGTTACGTCGGACAAAAGGCACACTTCTTGACGGGGAGCCTATCATTTCCTTGCCACCCAAATCGGTAGAGTTGAAGAAAGTGGAATTTTCACAGGAGGAACGTGAATTCTATTCCAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCTTGCGATCATCCTCTGCTTGTCAAGCGATACAATTCTAATTCTCTGTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGACTATCTCTTCTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAATGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACTAATTGCAAAACTCGGCTAAGCATGTCTTCAGTGTTCTCCAAAGTCACACTGAACAGTTCTTTTTCCGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGACTCAGCCATACGATTCTTCAAAAATTAAAGCTGCACTTGAGGTGTTGCAATCATTGTCTAAACCACAATGCTGTGCATCCCAAAATAAATTGGTGCAGATTAGTTCTGGGGAAAGTACTGATGGCCTTGGTAGCTCATCTAGTGCCGCCACACCGAAATCCTTAATTGAATTTCCGGAGAATCAAAATTTGATTGAGGAGAGAAACTCTAATAATTCTGTTGGTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCCTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTCGCTGCCTGCCATGTTCTAATGCTAGATCTATGGTGGAATCCTACAACCGAAGACCAGGCAATAGATAGAGCGCATCGAATTGGACAGACTCGTCCTGTCACAGTTTTACGTTTAACTGTTAGGGATACAGTGGAAGACCGTATATTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3972 0.4104 MMADEGFDYPYGNTVDDDKLCIDLETIMSVLDEDTDPSGSSPEDSTLKNVSPGESGIHDNFLLQNGASVLQCEHENQGPSSHTFSSPNAHAGGYRESFSVGENDEICFTERPGVSNCEIPAYIADTRFPDPEANSSNVVCGDNLNLSLWKSENDSQVKHAGYDAESEHASHGSNVDNVDVNIEDYGNYMKDIIGISGKQENDSCTSFEMPFVDADISSHVATSTDSSICQGSNVPNGYSDFYPSLNCYRGMDDRSVVANTSGCLSNGVYHEWKNEEMMRNTKVAKMEFFADTTHASSGMHFSPNGGISFPDSQFMFADSNYASFFPGNVSFEDNTSMQLSIWAPYISSGGQSLNVKAERDEQIMPYQSSVHSDDTEFNAGQETKQLHGIFGAVGCQGNDLFKCEDSVTIATTEKANYYHDAIDGSANNFPELMGNLNLKPLDKSLYNAQTLIASGKQYNCVMNKGEGKTIEHRSIDSQVPKGNIERSSIEDDSDVCIIEGISHPAPIIRPVELGNCLNASQSSRGGYTHSYMVGGMRPKARDEQFILRVALQDLSQPKSEVSPPDGLLTVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPTTLLSKCNNVQKCELETLNLDADDDQLPENGVKNESNMCQDLSSRIPNKSINLLVHAKGRPSAGTLIVCPTSVLRQWADELQNKVTGKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKETYDDLAVPSKKRKCPPSSSKSGKKGLDTVMLEARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEEREFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKTRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVEESEFCSQTQPYDSSKIKAALEVLQSLSKPQCCASQNKLVQISSGESTDGLGSSSSAATPKSLIEFPENQNLIEERNSNNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02517 1323 SMART ring_2 1008 1046 IPR001841 -
Cca08g02517 1323 Pfam Zinc finger, C3HC4 type (RING finger) 1008 1044 IPR018957 GO:0046872
Cca08g02517 1323 Gene3D - 543 635 IPR038718 -
Cca08g02517 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1150 1318 IPR001650 -
Cca08g02517 1323 CDD SF2_C_SNF 1168 1275 - -
Cca08g02517 1323 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 495 1322 - -
Cca08g02517 1323 SUPERFAMILY RING/U-box 1005 1057 - -
Cca08g02517 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 892 IPR027417 -
Cca08g02517 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 587 854 IPR014001 -
Cca08g02517 1323 SMART helicmild6 1182 1265 IPR001650 -
Cca08g02517 1323 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Cca08g02517 1323 CDD DEXDc_SHPRH-like 572 892 - -
Cca08g02517 1323 MobiDBLite consensus disorder prediction 33 53 - -
Cca08g02517 1323 Gene3D - 907 1322 IPR027417 -
Cca08g02517 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1322 IPR027417 -
Cca08g02517 1323 MobiDBLite consensus disorder prediction 32 58 - -
Cca08g02517 1323 Gene3D - 753 905 IPR038718 -
Cca08g02517 1323 ProSiteProfiles Zinc finger RING-type profile. 1008 1047 IPR001841 -
Cca08g02517 1323 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 495 1322 - -
Cca08g02517 1323 MobiDBLite consensus disorder prediction 750 768 - -
Cca08g02517 1323 MobiDBLite consensus disorder prediction 750 781 - -
Cca08g02517 1323 SMART ultradead3 568 869 IPR014001 -
Cca08g02517 1323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1059 IPR013083 -
Cca08g02517 1323 Pfam Helicase conserved C-terminal domain 1165 1265 IPR001650 -
Cca08g02517 1323 Pfam SNF2-related domain 592 969 IPR000330 GO:0005524|GO:0140658
Cca08g02517 1323 Gene3D - 667 752 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02517 Cca-Chr8 59454383 59463083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02517 462 1322 RAD5 or RAD16-like Gene Family AT1G61140 61.409 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca08g02517 SNF2_N 6.6e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02517 - - gmx:100805307 2049.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02517 08 59454383 59463083 Cca08g02517 08 59454383 59463083 ECH
Cca09g01300 09 35611274 35621314 Cca08g02517 08 59454383 59463083 PCT