Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02516 ATGGACAATATCTACACTTTGGTAATTTTTATACTTTGTCTATCTTTGAAGGCTTGTAGTGTTTGTTCTAGAGATACACAATGGGGTGGTGTGAGGAGAATGAGGTCTGAGGAAAATGATGATCTTGTGACTAACTTGCCTGGCCAGCCTCCTGTAAATTTCAAACACTACGCTGGATATGTCACAGTCAACCAAACCAATGGACGAGCACTCTTTTACTGGTTCTATGAGGCCATGACAAACCCTCAAGACAAACCATTGGTGCTGTGGCTTAATGGAGGTCCTGGGTGTTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACATCGATGGCAAGGACCTTAAATTTAATAACTTCTCATGGAACAGAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACCACCGAATATGCACAACTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCGTATAGAACAAGGACATTTTACATAGCAGGAGAGAGCTATGCAGGAAAGTATGCGCCGGAGCTGGCTGAACTCATCCACGACAGAAACGAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGGAACCCTGAAACATCTGATGCTGAGGACTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGACGAAACTTACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGATACGTGGAATAATAAAGATTGTAGTCATGGAGTGGATGAAGTACTAAATCAGTATAACAAAATTGATATCTACAGCCTCTACACCTCTGTTTGCTTCGCCAGCACAGCGCGTTCAAACGATCAATCCAGGCAAACGGTGATGAATCGGTCATCTAAAATGATGCCACGGATCATGGGCGGTTATGACCCATGTTTGGATGACTATGCTAAAGTTTTTTACAATAGACCAGATGTTCAGAAGGCCCTCCATGCTAGTGATGGTCACAATCTGAGGAATTGGAGTATTTGCAATGACAACATATTCAATGGATGGAAACAGTCAAAGTCATCTGTTATCCCAATCTACAGGAAGCTTATTGCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACTGATGGTAGGGTGCCAGTGCTGTCAACAAGATACAGCTTAAGTCTTCTAGGTTTGCCTATCACTAAGAGATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGGCTTACCTTTGCGACATTTCGGGGAGCTGGGCATGCAGTGCCTTGTTTCAAACCAAGCAACTCCCTCGCGTTTTTCTCCTCATATCTTCTTGGAGAATCACCACCCTCTACAAAATGA 1428 0.437 MDNIYTLVIFILCLSLKACSVCSRDTQWGGVRRMRSEENDDLVTNLPGQPPVNFKHYAGYVTVNQTNGRALFYWFYEAMTNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDIDGKDLKFNNFSWNREANMLFLESPVGVGFSYSNTTTEYAQLGDDFTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYAPELAELIHDRNEDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDTWNNKDCSHGVDEVLNQYNKIDIYSLYTSVCFASTARSNDQSRQTVMNRSSKMMPRIMGGYDPCLDDYAKVFYNRPDVQKALHASDGHNLRNWSICNDNIFNGWKQSKSSVIPIYRKLIAAGLRIWVYSGDTDGRVPVLSTRYSLSLLGLPITKRWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSYLLGESPPSTK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02516 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 472 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 SUPERFAMILY alpha/beta-Hydrolases 39 469 IPR029058 -
Cca08g02516 475 Gene3D - 374 468 - -
Cca08g02516 475 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Cca08g02516 475 Pfam Serine carboxypeptidase 47 466 IPR001563 GO:0004185|GO:0006508
Cca08g02516 475 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Cca08g02516 475 PANTHER CARBOXYPEPTIDASE 9 472 - -
Cca08g02516 475 Gene3D - 327 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02516 Cca-Chr8 59418855 59425451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02516 332 469 Calmodulin-binding Proteins AT2G22960 33.094 2.52e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01298 09 35570540 35575254 Cca08g02516 08 59418855 59425451 PCT