Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02511 ATGGATTCATCTTCAGGGTCTGAGTCTCAGCAGCACCCACAGCTCCCTCCAGGGTTTCGGTTCCACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAAACTCCGTTCCTCTTCCTGTTGCCATCATCGCTGACGTTGATCTCTACAAGTTCGACCCATGGGAACTGCCAAGTAAAGCAACGTTTGGTGAACAAGAATGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCGAATGGGGCAAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCCACCGGAACTGACAAGCCCATACTTACATCTAATGGTCATCACAAAGTTGGTGTTAAGAAAGCCCTTGTTTTCTATGGCGGAAAGCCTCCAAAAGGGGTCAAAACCAGTTGGATCATGCACGAGTACAGGCTTCTTGGCAATTCCTCAAACCCATCTTCTCTCCTGCCTTCAGATCATGCACATAGCAACAAGAAGACTTCCTTGAGACTTGACGATTGGGTGTTGTGCCGAATATACAAGAAAAGTAACAGTACCATCCTGCCAAGGTTACCTTCGATGATAGAGCAGAATAAGGAAGCTTCTACGGAGAGTACTATGCTACCAATGATGTCAACTTTGTCGATGGCTAATAACAATACTCCTCAGAACTCCAACCCCACATCTTCGAGAAGCGCAAGTTATGGACACCAGCTGGCACTAGATCAAAACGATGATAACTTCTTCGATGGAATCTTAGGAGTTGACCAGAGCATGCAGCAACATGTTTCTGATGCAAAGGGAAACTTCCCTGTGAAACGAGCACATGAGTTTTGGAATGACACTGGGTCATCCTCTTCAAGCAGGCTCAGGCGATTCCATTGTGATCTCAACACTGTTGAGGAAAACAGTTCCTTCGTTTCTCTGCTTAGCCACCTCCCACAGAACACAACGTTTCATCCAAACGCGCTTCTTGGCCCTGTTGccatttaccactcctccctcccctcctcctccgccctccactattccctcctctccaccgtcgaccatgactcctccaaggttacttttgtctctgacgaaatcctcgtcctccgcggcaccatcgacgtcaacctcggctcctccgacgccgacgccgtcaaccagaatctcgtggaggagaccaaccgcatcctggccgagatctgctctgacgccgaccccaacgaccccgacgagcaagcccccttgaaccctaacGTTGCACCTTACAAAATTTTTCGAATTGATAAACATGAAGTTTCAACTGTAACCCCTGTTCCTTATGAAACAAATGTCGAGGAGTTGACTCAAGAGATGGTTGAACATAGAAGTCTAACTTCTGAACAGAAGGGAAAGGACTTGTTAGATTGTAATGGCAATAGAGATAATTGTGAAAAGCATCCAGGGGCGAGTAGTTCCTCTTCCCTTCCTCAAGCTGCCTTTGAACTTTTCTCCAGCATTAAGGCCAGCATATTCCAAACACTTGGTGTAACATCACTTTCCAGAAAATTCTCCTCAGTTCCTACGTTTGAAGAGGGAAACGAATCTAATTTTCTTGGTAAGAAAGATATGGACACCTGCGGCAATGACCCTGAATCACGTCCTGTGAGCACGGTACAGTCTTCTGAGGACATAACTCCATATTGTGAAGTTATCAAGACTCGTGAGAGGAATGATTTTCCAGTTTCTTTAGACAACAACAGTTCAGATCAGTTGAAACAGTTTGATGTGATTGATAATTGCTCAGACCACCACTTTTTTGACGAGGGGAAAGGGTTGTCATTGTCTCAGGTTAAAAAGGATTGGGTGAAGAAGGTACAGCAAGAATGGAACATCCTGGAGAAAAATCTTCCTGAAACTATTTATGTCCGCGTTTTTGAAGAAAGAATGGATCTCATGCGAACAGCCATTGTTGGTGCATCTGGGACACCTTATCACGATGGACTTTTTTTCTTTGATATACGTTTCCCTCCTGAGTATCCCAGTGAACCCCCTGTAAGCTTTTGA 2025 0.3862 MDSSSGSESQQHPQLPPGFRFHPTDEELVVHYLKRKANSVPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDKPILTSNGHHKVGVKKALVFYGGKPPKGVKTSWIMHEYRLLGNSSNPSSLLPSDHAHSNKKTSLRLDDWVLCRIYKKSNSTILPRLPSMIEQNKEASTESTMLPMMSTLSMANNNTPQNSNPTSSRSASYGHQLALDQNDDNFFDGILGVDQSMQQHVSDAKGNFPVKRAHEFWNDTGSSSSSRLRRFHCDLNTVEENSSFVSLLSHLPQNTTFHPNALLGPVAIYHSSLPSSSALHYSLLSTVDHDSSKVTFVSDEILVLRGTIDVNLGSSDADAVNQNLVEETNRILAEICSDADPNDPDEQAPLNPNVAPYKIFRIDKHEVSTVTPVPYETNVEELTQEMVEHRSLTSEQKGKDLLDCNGNRDNCEKHPGASSSSSLPQAAFELFSSIKASIFQTLGVTSLSRKFSSVPTFEEGNESNFLGKKDMDTCGNDPESRPVSTVQSSEDITPYCEVIKTRERNDFPVSLDNNSSDQLKQFDVIDNCSDHHFFDEGKGLSLSQVKKDWVKKVQQEWNILEKNLPETIYVRVFEERMDLMRTAIVGASGTPYHDGLFFFDIRFPPEYPSEPPVSF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02511 674 Pfam Ubiquitin-conjugating enzyme 612 671 IPR000608 -
Cca08g02511 674 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Cca08g02511 674 Gene3D Ubiquitin Conjugating Enzyme 569 674 IPR016135 -
Cca08g02511 674 Gene3D NAC domain 24 184 IPR036093 GO:0003677|GO:0006355
Cca08g02511 674 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 607 674 IPR000608 -
Cca08g02511 674 ProSiteProfiles NAC domain profile. 15 179 IPR003441 GO:0003677|GO:0006355
Cca08g02511 674 SUPERFAMILY UBC-like 601 672 IPR016135 -
Cca08g02511 674 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 1 316 - -
Cca08g02511 674 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g02511 674 PANTHER NAC TRANSCRIPTION FACTOR 56 1 316 - -
Cca08g02511 674 SUPERFAMILY NAC domain 8 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02511 Cca-Chr8 59366848 59377368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02511 2 322 NAC Transcription Factor Family AT1G61110 55.215 8.08e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g02511 NAM 8.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02511 - - gmx:100792372 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01296 09 35535320 35537357 Cca08g02511 08 59366848 59377368 PCT