Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02501 ATGACTTGTGGCTGCTTTGGAGCCAAATCCACAAAGGAAAGACGCCCTTCTCATGTTCCTAGTGAAATTCATGGCTATCCGTTAGATAATGTTAGGCAATTTTCTGATAAAGAACTGAAATTCGCAACTGATAATTATCATTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAGAGATGGAAGACGTGTAGCAGTTAAGACTCTCTCAGTTTGGTCAAAGCAAGGAGTTCGTGAGTTTTTGACAGAAATTGAAACTTTGTCAAATGTTAAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGCAACCTTAATAGTGCACTACTTGGCACAAGGAATGCAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATTTGTATAGGCACCGCAAAGGGTCTTGCATTTCTTCATGAAGAACTTGCACCACCTATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGTGATTTCAATCCCAAAATAGGTGATTTTGGTTTGGCTAAATTATTTCCAGATGACATAACTCACATTAGCACCAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTATTCTTGAAATAATTAGTGGCAGAAGCAGCGCCAGAAGGACAAATGGGGGAGGGTCACACAAACAACTCTTGGAATATGCGTGGCAACTTTATGAAGAGGGGAAGTTGTTGGAGTTTGTTGATGGAGAAATGGAAGAATATCCTGAGGAAGAGGTAAAGAGGTACATGAAGGTCGCTCTTTTCTGCACACAAGCAGCAGCAGGTAGAAGGCCATTGATGATACAGGTGGTTGATATGCTATCCAAGGCAATTCAACTGAATGAGAAAGAACTTACAGCTCCAGGATTCTTCACAAATGAAGGAGAATCCTCTAGAAAGAACTTCAACCCTGTCTCTTCAAATGCCTCTACTCATGTTGCTATTACTCAGGTCACCCCACGGTGA 1095 0.4091 MTCGCFGAKSTKERRPSHVPSEIHGYPLDNVRQFSDKELKFATDNYHSNNKIGRGGFGTVYQGTLRDGRRVAVKTLSVWSKQGVREFLTEIETLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGNLNSALLGTRNANIKLDWRKRSAICIGTAKGLAFLHEELAPPIVHRDIKASNVLLDSDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGRSSARRTNGGGSHKQLLEYAWQLYEEGKLLEFVDGEMEEYPEEEVKRYMKVALFCTQAAAGRRPLMIQVVDMLSKAIQLNEKELTAPGFFTNEGESSRKNFNPVSSNASTHVAITQVTPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02501 364 Gene3D Phosphorylase Kinase; domain 1 19 121 - -
Cca08g02501 364 PANTHER - 1 342 - -
Cca08g02501 364 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Cca08g02501 364 Gene3D Transferase(Phosphotransferase) domain 1 122 333 - -
Cca08g02501 364 PIRSF ILK 9 329 - -
Cca08g02501 364 ProSiteProfiles Protein kinase domain profile. 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02501 364 CDD STKc_IRAK 52 319 - -
Cca08g02501 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cca08g02501 364 Pfam Protein kinase domain 46 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02501 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 342 - -
Cca08g02501 364 SUPERFAMILY Protein kinase-like (PK-like) 26 323 IPR011009 -
Cca08g02501 364 SMART serkin_6 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02501 Cca-Chr8 59204779 59208102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02501 12 354 Receptor kinase-like Gene Family AT1G56120 48.276 7.94e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02501 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02501 - - gmx:100809588 654.055