Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02477 ATGGCATTCCAGCCCTACATATCCCAGGATTTGAAAACCATCCCAAATGCAGAAAACTCAAATGGTTGCTTCGATTGCAACATCTGCCTCGACTTTGCACATGAACCAGTAGTGACCCTATGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCACCCACAGTGCCCTGTTTGCAAAGCTGATATATCTCACAGCACAATGGTTCCACTCTATGGCCGTGGCCAAGCCACATCAGAAGGAAAAACACCTTGTGATGTTTTCATACCACCAAGACCACCTGCTTCATGTGCACAAACTCTATTTGATACATCATCACAAAGTGATCAACAACACATTCCATATCGTAACCCTTATCAGGGTCACTACTTCACATCTCAACCATCCCATGAAGATGAGGATGATGCAACTTCACAAATGCTCAATCTTGGTGCCACCATGACTCCAGGATCACACCACTATCACCCTGTGACTGGCATGTTTGGGGAGATGGTTTATGCTAGAGTGTTTGGCAACTCACAAAATTTGTATGCATACCCAAATTCTTATCAGATGATGGCAAGTACTAGCGCTAGATTGAGAAGGCAAGAGATGGAGGCACACAAATGTTTGAACAGAATTTCTATTTTTCTCTTTTGTTGCTTTCTTCTATGTCTTGTTGTTTTCTGA 708 0.4393 MAFQPYISQDLKTIPNAENSNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISHSTMVPLYGRGQATSEGKTPCDVFIPPRPPASCAQTLFDTSSQSDQQHIPYRNPYQGHYFTSQPSHEDEDDATSQMLNLGATMTPGSHHYHPVTGMFGEMVYARVFGNSQNLYAYPNSYQMMASTSARLRRQEMEAHKCLNRISIFLFCCFLLCLVVF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02477 235 SUPERFAMILY RING/U-box 22 86 - -
Cca08g02477 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 235 - -
Cca08g02477 235 CDD RING-HC_AtRMA_like 24 74 - -
Cca08g02477 235 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Cca08g02477 235 SMART ring_2 26 72 IPR001841 -
Cca08g02477 235 Pfam Zinc finger, C3HC4 type (RING finger) 26 72 IPR018957 GO:0046872
Cca08g02477 235 ProSiteProfiles Zinc finger RING-type profile. 26 73 IPR001841 -
Cca08g02477 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca08g02477 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02477 Cca-Chr8 59002295 59004753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02477 10 221 C3H Transcription Factor Family AT4G27470 40.000 1.14e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02477 K10666 - gmx:100816864 373.244