Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02466 ATGATCACACAGCCTCTTCTCCTCTTAATTCTCCTCCTTTTCAACTCAACACACGCCACTGATTTCCTCTTCAACGGTTTCAACTCCTCTCAAGTGCTGCTCTTCGGCAATGCCACCATCGATTCTCGAATTCTAACGCTCACCCACAATCAAACTTTCTCCATAGGTCGTGCCTTGTACCGCGAAAAAATCCCCACCAAGAAACCAAACTCTTCTTACGTGTACCCTTTCTCCACCTCTTTCATCTTCGCCATGGCACCTTATGAAGACACTCTTCCGGGGCATGGTTTGGTTTTCATCTTCACGCCAGTCACGGGCATCCACGGCACAAGCTCTGCACAGCACCTTGGTCTGTTCAACCTCACCAACAACGGAAACGCTGGTAACCATGTTTTTGGTGTTGAGTTCGATGTGTTCATGAACCAAGAGTTTGATGACATCAACGCCAACCATGTTGGGATTGACATAAACTCTCTCAAGTCTTCTGTTTCTAATGATGCTGGCTATTGGCCAGATGATGGTGATGAGTCTTTGAAGGAATTGACGCTTAACAATGGTGAGAATTACCAAGTTTGGATTGACTATGAAGATTCTTTGTTTAATGTTACCATGGCACCGGTTGGTATGAAAAGGCCAAGTAGGCCTTTGTTGAATGTTTCTCTCAACTTATCTCAGGTTTTTGAGGATGAAATGTATGTTGGGTTTACTAGTGCCACTGGCCAATTAGTTGAGAGCCACAAGATTTTGGGCTGGAGTTTCAGCAACGAGGATTCTTCCTTGAGTGATGAACTAATTACTACTGGGTTACCTTCTTTTGTTCTTCCAAAAGATTCGATTTTTAAGTCAAAGGGGTTTGTTGCAGGGTTTACTATTGGAATTTTCTTTGTTGTTTGTGTCTTGGTTTTGTTGTCACTGTTTTTGATTCAGAGGAAGCGCAGGAGATATAGGAAGAGGCAGGAAATGGAAGATTGGGAGTTGGAGTATTGGCCACACAGAATGGCTTATGAAGAAATTGAGGCAGCAACAAAGGGGTTCTCTGAGGAGAATGTGATTGGGGTTGGTGGGAATGGGAAAGTATACAAGGGTGTTCTACGAGGAGGGGTGGAGATTGCTGTGAAGCGAATTTCTCATGAAAATGATGGGGTGAGAGAATTTCTTGCAGAAATTGCAAGCCTTGGGAGGTTGAAGCAAAGGAATTTGGTGGGGTTGAGAGGTTGGTGCAAGAGAGATACTGGAAATTTCTTGTTAGTTTATGATTACATGGAAAATGGGAGCTTGGACAAGAGGGTGTTTGATTGTGATGAGAGAAAGATGTTAGGTTATGAAGATAGGATAAGGATTATTAAAGATGTCGCTTTTGCAGTGTTGTACTTGCATGAGGGGTGGGAATCTAAGGtggtgcatagggacatcaaggccagcaatgtgttacttgataaggatatgaatggaaggcttggggattttgggttagccagaATGCATAGTCATGGCCAAGTTGCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCTGAAGTGATCAAGACTGGAAGAGCTTCCACTCAGACAGATGTTTACATGTTTGGTATCTTGATTTTGGAGGTCTTGTGTGGAAGGAGGCCTTTAGAAGAAGGTAAACCCCCTTTGGTGGAGTTTATTTGGCAACTAATGGCACAAGGGCAACTTGTGAGTGCACTTGATGAAAGGCTAAAGGCTAAGGGAGAGTTTAGTGTGCAAGAAATGGAGAGGGTAATGCACTTGGGTTTGTTGTGTGCCTACCCTGAACCAAAGGCCAGGCCCACAATTAGACAAGTGGTGAATGTTCTAGAGGGGAAGAATGAGGGAGAGGAGTCAGAAATTGAGAATATGGATAGTTATTTGCTTCAACAGTTGAAATCAAGGGATATTTTGTCCGAGTATTCCCAATATTTTAGCTATGCATCACACCCAACTTTTCAAGATATTCGTCACTCTTCTTCAATGTCCCTCACTATGTCCGAATCTCTAGTTGAGGGCAGGTAA 2034 0.4174 MITQPLLLLILLLFNSTHATDFLFNGFNSSQVLLFGNATIDSRILTLTHNQTFSIGRALYREKIPTKKPNSSYVYPFSTSFIFAMAPYEDTLPGHGLVFIFTPVTGIHGTSSAQHLGLFNLTNNGNAGNHVFGVEFDVFMNQEFDDINANHVGIDINSLKSSVSNDAGYWPDDGDESLKELTLNNGENYQVWIDYEDSLFNVTMAPVGMKRPSRPLLNVSLNLSQVFEDEMYVGFTSATGQLVESHKILGWSFSNEDSSLSDELITTGLPSFVLPKDSIFKSKGFVAGFTIGIFFVVCVLVLLSLFLIQRKRRRYRKRQEMEDWELEYWPHRMAYEEIEAATKGFSEENVIGVGGNGKVYKGVLRGGVEIAVKRISHENDGVREFLAEIASLGRLKQRNLVGLRGWCKRDTGNFLLVYDYMENGSLDKRVFDCDERKMLGYEDRIRIIKDVAFAVLYLHEGWESKVVHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVASTTKLVGTVGYMAPEVIKTGRASTQTDVYMFGILILEVLCGRRPLEEGKPPLVEFIWQLMAQGQLVSALDERLKAKGEFSVQEMERVMHLGLLCAYPEPKARPTIRQVVNVLEGKNEGEESEIENMDSYLLQQLKSRDILSEYSQYFSYASHPTFQDIRHSSSMSLTMSESLVEGR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02466 677 PANTHER - 7 669 - -
Cca08g02466 677 Pfam Protein kinase domain 346 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02466 677 CDD lectin_legume_LecRK_Arcelin_ConA 20 254 IPR001220 GO:0030246
Cca08g02466 677 Gene3D - 18 265 - -
Cca08g02466 677 SMART serkin_6 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02466 677 Gene3D Phosphorylase Kinase; domain 1 307 420 - -
Cca08g02466 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cca08g02466 677 Gene3D Transferase(Phosphotransferase) domain 1 421 638 - -
Cca08g02466 677 Pfam Legume lectin domain 20 258 IPR001220 GO:0030246
Cca08g02466 677 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Cca08g02466 677 ProSiteProfiles Protein kinase domain profile. 345 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02466 677 SUPERFAMILY Protein kinase-like (PK-like) 322 614 IPR011009 -
Cca08g02466 677 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 7 669 - -
Cca08g02466 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 256 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02466 Cca-Chr8 58872666 58875035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02466 15 566 Receptor kinase-like Gene Family AT4G04960 67.742 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca08g02466 Pkinase 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02466 - - gmx:100804391 1165.6