Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02462 ATGGGAGAAGATACCAATTCTTGGATTAGGAGGACAAAGTTTTCACACACGGTGTGCCATCGTTTGGATCCCTCTAGATTAGGTTCTATTCCTCTTAGCAGCATTCAGTCAAAGCAAAAAGCAAGTCCTGCCGCACAGGTTCAGATAAACCCCATAACCAACAAGCAGAGATCTTTGTCACCATTGCCTCAGACTCTTCTTTCTGACGCCTTTAGGGAAGCTAGACATGAACAGAAGAGGTTCTCCACACCGAATCCCCGGAGGGAAAAGAGGATCATGGGCAAGTTGTTGAACAAGGATTCTCGGGAGGTTAAGGGATCACCTCCTCGTAGTCCAAATATGCAAGTGAAATTAAAGAACCGCAAGGATTCATCATGGACTAAGTTTTTGGATAATGGTGGAGGAAAGATTACTGCTGTGGAAACAGCTGAAGAGTGGAATGTTGACATGTCTCAGCTGTTTCTTGGCCTAAAGTTTGCTCATGGGGCTCATAGTAGGCTTTACCATGGTGTATATAAAGAAGAGGCAGTAGCTGTTAAAATCATTAGGGCACCTGAAGATGATGAAAGTGGAACTTTGGCTTCTCGGTTAGAGAAACAGTTCATTAGAGAAGTCACCCTTTTATCTCGTCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCATGCCGAAAACCACCAGTTTATTGTATAATCACGGAATATCTGGCAGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTACAAAAGCTTGTAGCTTTTGCACTGGATATTGCTCGCGGAATGGAATATATACATTCTCAAGGTGTCATTCATCGTGACCTGAAACCAGAGAATGTTCTTCTAGATGAAGACCATCACCTTAAAATTGCTGATTTTGGTATTGCGTGTGAGGAAGCATCCTGTGACTTATTGGCTGATGACCCTGGCACCTACCGTTGGATGGCACCTGAGATGATCAAGCGTAAATCCTATGGTAGAAAGGTTGATGTCTACAGTTTTGGGCTTATGTTATGGGAAATGTTGACTGGAACAACACCATATGAGGATATGAATCCAATACAGGCTGCTTTTGCAGTGGTAAATAAGAATTCAAAGCCAGTTATTCCATCAGACTGTCCACCTGCTATGAGAGCTCTAATTGAGCAATGTTGGTGCTTGCAACCAGACAAGAGGCCTGAGTTCTGGCAGGTTGTTAAGGTATTGGAGCAATTTGAATCTTCACTTGCCCGTGATGGAACCTTGACTCTGGTGCCAAACCCTAGTTGGGATCATAAGAAAGGCTTTCTTCATTGGATTCACAAGCTTGGTCCTCTGAATCAAAATAGCGGCCCTGTGCCTAAACCCAAATTCACATGA 1380 0.4326 MGEDTNSWIRRTKFSHTVCHRLDPSRLGSIPLSSIQSKQKASPAAQVQINPITNKQRSLSPLPQTLLSDAFREARHEQKRFSTPNPRREKRIMGKLLNKDSREVKGSPPRSPNMQVKLKNRKDSSWTKFLDNGGGKITAVETAEEWNVDMSQLFLGLKFAHGAHSRLYHGVYKEEAVAVKIIRAPEDDESGTLASRLEKQFIREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLAEGSLRAYLHKLEHQTISLQKLVAFALDIARGMEYIHSQGVIHRDLKPENVLLDEDHHLKIADFGIACEEASCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLMLWEMLTGTTPYEDMNPIQAAFAVVNKNSKPVIPSDCPPAMRALIEQCWCLQPDKRPEFWQVVKVLEQFESSLARDGTLTLVPNPSWDHKKGFLHWIHKLGPLNQNSGPVPKPKFT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02462 459 Gene3D Phosphorylase Kinase; domain 1 141 236 - -
Cca08g02462 459 MobiDBLite consensus disorder prediction 41 61 - -
Cca08g02462 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Cca08g02462 459 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 436 - -
Cca08g02462 459 MobiDBLite consensus disorder prediction 74 106 - -
Cca08g02462 459 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 436 - -
Cca08g02462 459 MobiDBLite consensus disorder prediction 74 116 - -
Cca08g02462 459 Pfam Protein tyrosine and serine/threonine kinase 158 409 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 PRINTS Tyrosine kinase catalytic domain signature 233 246 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 PRINTS Tyrosine kinase catalytic domain signature 271 289 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 PRINTS Tyrosine kinase catalytic domain signature 317 327 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 PRINTS Tyrosine kinase catalytic domain signature 336 358 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Cca08g02462 459 CDD STKc_MAP3K-like 160 409 - -
Cca08g02462 459 SUPERFAMILY Protein kinase-like (PK-like) 140 409 IPR011009 -
Cca08g02462 459 ProSiteProfiles Protein kinase domain profile. 153 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02462 459 SMART serkin_6 153 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02462 459 Gene3D Transferase(Phosphotransferase) domain 1 237 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02462 Cca-Chr8 58830996 58834003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02462 1 459 MAP Kinase Kinase Kinase AT5G58950 54.476 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca08g02462 PK_Tyr_Ser-Thr 5.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02462 - - gmx:100500590 843.188