Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02461 ATGGAGAACAACCCTAGTCCATCCAAAGTTGACAGAAAATTCATCGAGAGGAATAGAAGAAACCAAATGAAAACTCTCTTCCGGAAACTCAACTCTCTTGTGCCTCATCAAAGATCAAGGGAGTCTATTTCACTGCCGGATCAGCTAGAAGAAGCCGCAGAATACATAAAGAAATTACAGATTAATGCGGAGAAACTGAAGGACAAGAAGAACATGCTACTGGGAAATGAAAGGTCAAATGGGAGAATGTATGGAGGAAAAAGCGTGGGGTTAAAATCTCCACGGATTGAGATCCAACAAATGGGTTCAGCCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAAATCATTCGCGTTCTTGGTGAAGAAGAAGTGGATATCGTTAATGCCAGTTATAAAGTTATTGGAGATGCAGTTTTCCATTCAATACACTGTCAAGACGGGGAATCGGCGAAAGGAGCTGCGAGGATATCTGAGAGACTAAAGAACTTTATCTATGATTCTGGCTACGGTGCCTTTAATGTGTAA 546 0.4121 MENNPSPSKVDRKFIERNRRNQMKTLFRKLNSLVPHQRSRESISLPDQLEEAAEYIKKLQINAEKLKDKKNMLLGNERSNGRMYGGKSVGLKSPRIEIQQMGSALEVVLITGLDSQFMFSEIIRVLGEEEVDIVNASYKVIGDAVFHSIHCQDGESAKGAARISERLKNFIYDSGYGAFNV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02461 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 76 IPR036638 GO:0046983
Cca08g02461 181 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 172 IPR015660 GO:0003700|GO:0006357
Cca08g02461 181 PANTHER TRANSCRIPTION FACTOR BHLH162 1 172 - -
Cca08g02461 181 Gene3D - 2 83 IPR036638 GO:0046983
Cca08g02461 181 SMART finulus 13 65 IPR011598 GO:0046983
Cca08g02461 181 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Cca08g02461 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Cca08g02461 181 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02461 Cca-Chr8 58803457 58804874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02461 10 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 46.243 6.64e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g02461 HLH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02461 - - gmx:100784418 286.574