Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02460 ATGGGAAAATCCTTCGACGTGGGAGCGGTACCCTTCAACGCCGACGGCTGGGGTCCGCCGGACGCCGCCGCAGGAGGGACGAACAATAACCTCCCTCTCAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAACTGGGCCGCATCGCCGACTGGACCCGCAACTTCAACAACCCGGCCCGGTCCAAGAACCCGGCCGACTCCGTCTTCGACTTCACCAACGACGACTCCTTCCCGGCCTCGGCCGACGACGACGCCTCCTTCCGCCTTGTCGACGGCAAGCCCCCGCCGCGGCCGAAGTTCGGTCCTAGGTGGCGCTTCCAGCAGCAGCGGCAGCTCCCGCAGCGgcgcgacgaggaagtggaggctcgcaagcgcgaagccgagaaggaccgtgcgcgacgcgATCGGCTCTACCACATGAACCGGTCAAACCCTAACCAGCAGCGGCGCGAAGCGGCGGTGTTCAAATCCTCCGTTGACATCCAACCCGAGTGGAACATGCACGACCAGATCCCCTTCTCCACCTTCTCCAAACTCTCCTTCACCGTCCCTGAGCCCGAGGATCTTCTCCTCTGCGGCGCCCTCGAGTACTACGACCGCTCCTACGACCGCATAACCCCCAAAAACGAGCGCCGCCTCGAGCGTTTCAAGAATCGCAACTTCTTCAAAGTCACTACCACCGATGACCCCGTCATCCGCCGACTCGCCAACGAGGACAAAGCCACCGTCTTCGCCACCGACACTATCCTCTCCACCCTCATGTGCGCTCCCAGGTCTGTTTATTCATGGGACATTGTCGTCCAGCGTGTCGGGAACAAGCTCTTCTTCGACAAGCGCGATGGGTCGCAGCTTGACTTGCTCTCCGTCCACGAGACCTCGCAGGAGCCCTTGCCGGAGGCCAAGGATGACATTAACTCCGCTCATTCTCTCAGCGTCGAGGCTGCTTATATCAACCAGAATTTCTCGCAGCAGGTTCTGATTAGGGACGGGAATAAGGTCACTCTTGATGAGGCTAATCCTTTTGCTAATGAAGGGGAGGAGGTCGCTTCCGTTGCTTATAGGTATCGTAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCCAGGTGTGAGGTGCATAGTGTGGTTGATGTGAATAAGCAGAGGTCGTTCCTTACTTTGAATGCTTTGAATGAGTTTGATCCTAAGTATTCTGGTGTGGATTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCCACTGAGCTTAAGAATAATGCGAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTGTTGGCCAGTGCGGATATGATGAAGTTGGGTTATGTGTCGAGGATTCATCCCCGTGATCATTTTAATCATGTGATTTTGGCTGTGGTGGGGTATAAGCCAAGGGACTTTGCGGCGCAGATTAATTTGAACACCGCGAATATGTGGGGGATTGTCAAGTCTATTGTGGATTTGTGTATGAAATTGAATGAGGGGAAATATGTGCTTGTGAAGGATCCTTCTAAGCCTCAGGTTAGGATTTATGAGGTTCCAGCGGATGCTTTTGAGAATGACTATGTGGAGGAGCCACTTCCGGAGGAGGAACAAGTTCAGCCTCCGGCGGAAGGTGCCGAGGGAGGAGAGGCAGCTGCTACCACTAATGACGTGGAAGATAAGCCTGTAGATGATAAAGCGACTTAA 1698 0.5294 MGKSFDVGAVPFNADGWGPPDAAAGGTNNNLPLNVPFAPFSRSDKLGRIADWTRNFNNPARSKNPADSVFDFTNDDSFPASADDDASFRLVDGKPPPRPKFGPRWRFQQQRQLPQRRDEEVEARKREAEKDRARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRSYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTLDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPAEGAEGGEAAATTNDVEDKPVDDKAT 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02460 565 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 515 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cca08g02460 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 4 560 - -
Cca08g02460 565 MobiDBLite consensus disorder prediction 111 134 - -
Cca08g02460 565 PIRSF Transl_init_eIF3d 1 545 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cca08g02460 565 Coils Coil 116 136 - -
Cca08g02460 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 560 IPR007783 GO:0003743|GO:0005737|GO:0005852
Cca08g02460 565 MobiDBLite consensus disorder prediction 524 565 - -
Cca08g02460 565 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g02460 565 MobiDBLite consensus disorder prediction 82 134 - -
Cca08g02460 565 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 527 IPR007783 GO:0003743|GO:0005737|GO:0005852
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02460 1 562 Eukaryotic Initiation Factors Gene Family AT4G20980 77.513 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02460 K03251 - gmx:100799613 1025