Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02452 ATGAAGTTCAACATTGCGAATCCTACCACCGGTTGTCAGAAGAAGCTGGAGATCGATGACGACCAGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGTTATGTCTTCAAAATCACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGCCGGGTTCGCCTCTTGCTGCATAGAGGAACTCCCTGTTTCCGTGGATACGGAAGGCGCAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTAAAGAAGGGTGATAATGATTTACCAGGCCTGACAGATGTGGAAAAGCCAAGGATGAGGGGTCCAAAAAGAGCATCCAAAATTCGCAAGCTGTTCAATTTGTCTAAGGAGGATGATGTGAGGAAATATGTCAACACATATCGCAGAACTTTTACAACTAAAAATGGGAAAAAGGTAAGCAAAGCTCCAAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGAATTGCTGATAAGAAGAAGAGAATTGCGAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCAAGATTGAAGGAGCAGAGGGACCGCCGCAGTGAGAGCTTGGCTAAGAGAAGATCAAGGCTTTCAAGTGCTACTAAACAAGCTGCCACAGCATAA 750 0.4667 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSRLSSATKQAATA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02452 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Cca08g02452 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Cca08g02452 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Cca08g02452 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca08g02452 249 MobiDBLite consensus disorder prediction 218 237 - -
Cca08g02452 249 Coils Coil 189 216 - -
Cca08g02452 249 MobiDBLite consensus disorder prediction 218 249 - -
Cca08g02452 249 Gene3D - 133 234 - -
Cca08g02452 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca08g02452 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02452 Cca-Chr8 58738161 58740231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02452 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.289 6.28e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02452 K02991 - gmx:100801194 437.573