Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02449 ATGTCGGATAACTCTGCGAAAATGGTATTAATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCATCAGGTGGAAGtaataataataataataatagtaaGGTAATGGAAAAACGGGGTCAAGAAATTCTGCAGCAGCAACAACAACAAGCCCTCAAGTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCAAGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGTGGAGGCTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATAACAAACCcttcttctgctgctgctgctgccattgacactgcttctaattcgtcttcttcttctgctcccactgctacttcACAACCCCAGATCGACACTGCTTCAACCTCAAACCATATCAACCCTTTGTTTTATGGCTTACCAAGTAGCTCTAGCGATGTCAATGTGAATCTTCCATTATTCCCTAGGTTTGGTTCTAGGATCTCAAGTTCCGGGTTTGATCTTCAGCTCAATGACGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTGTCCAATGAAGCTAGTGATAATAATAACGGTTACCGAAACGGGTTTGGTTCAAATAATACGCTTCTTTCAAGTTATAATTCCATCTTTGGTTcttctacttcaagttctactgccactactccatctaTGCCTTCTTTGTTGCTGCAACAGAAGTTCATGAGTGGTGGATTGAAAGATGGTCTTGAAAGCAACACTTTTCAGCAGGGCTTGGGCTTAACCCCACTAGAGCAGATGCAAATGGGAAGTGATCATATTCATAGCAGTGAGGCAGGGATGGTGGCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAGCAACAGGTTGGAGTGGAATAATGGTGCTTGCCAAAACCAGATCCAGCATGTGGGTTTGTACGATCCCTCGCTTTATTGGAATAACACAGTGGGTGTTTGGAATGATCAAGCTGCTAATATTGGTTCCTCAGTCACTTCTCTGATCTAG 1089 0.3912 MSDNSAKMVLIPPTTNQWPQVDDHKVLMGSSGGSNNNNNNSKVMEKRGQEILQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITNPSSAAAAAIDTASNSSSSSAPTATSQPQIDTASTSNHINPLFYGLPSSSSDVNVNLPLFPRFGSRISSSGFDLQLNDALGLGFSSGVVSNEASDNNNGYRNGFGSNNTLLSSYNSIFGSSTSSSTATTPSMPSLLLQQKFMSGGLKDGLESNTFQQGLGLTPLEQMQMGSDHIHSSEAGMVALKDVKVELGQSNRLEWNNGACQNQIQHVGLYDPSLYWNNTVGVWNDQAANIGSSVTSLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02449 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 349 IPR045174 GO:0003700|GO:0006355
Cca08g02449 362 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Cca08g02449 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 4 349 - -
Cca08g02449 362 MobiDBLite consensus disorder prediction 125 152 - -
Cca08g02449 362 Pfam Dof domain, zinc finger 58 114 IPR003851 GO:0003677|GO:0006355
Cca08g02449 362 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Cca08g02449 362 MobiDBLite consensus disorder prediction 105 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02449 Cca-Chr8 58698311 58700500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02449 60 362 C2C2-Dof Transcription Factor Family AT1G28310 41.486 4.87e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca08g02449 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02449 - - ccaj:109814566 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02449 08 58698311 58700500 Cca08g02449 08 58698311 58700500 ECH